PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna06165.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | FAR1 | ||||||||
Protein Properties | Length: 262aa MW: 29397.7 Da PI: 5.0839 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 23.5 | 1.9e-07 | 113 | 219 | 2 | 66 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk........................................ 47 fY++Y+ +GFs rk+k k+ g +++r++v skeg+r+++ mrna06165.1-v1.0-hybrid 113 FYSFYSLAMGFSFRKEKLDKN-IYGIVVRRQLVYSKEGTRKKKGPPkdnpvshnlgsrtsfmksvgilekgkqrnshdmqaeeegg 197 ******************999.8899**************9987665667777777777777777777777666666666666666 PP FAR1 48 ...tekerrtraetrtgCkakl 66 ++k ++r etr +C a+l mrna06165.1-v1.0-hybrid 198 npnKRKCPHSRRETRGDCLARL 219 5444444446666666666666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.7E-4 | 113 | 221 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MGWPLEAVSG SSTREALELA EESEGMGDGG SGGGENVAVE SGEKGSRNSR ILGENEEVQS 60 EEEDLEDEPE ETLVSNSVDT QNCLHYKGKW YEDLRYEDLK EVDFESVEEV DTFYSFYSLA 120 MGFSFRKEKL DKNIYGIVVR RQLVYSKEGT RKKKGPPKDN PVSHNLGSRT SFMKSVGILE 180 KGKQRNSHDM QAEEEGGNPN KRKCPHSRRE TRGDCLARLL LRDVIKPRVA PRVVNTSVGE 240 ASLCELKNLR KLAYLKRQID D* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna06165.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF19973 | 2 | 5 |
Link Out ? help Back to Top | |
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Phytozome | mrna06165.1-v1.0-hybrid |