PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna06133.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 805aa MW: 92820.1 Da PI: 7.5155

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna06133.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66	1e-20	35	110	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 +fY YA ++GF+vr+ + ++s+++g++ r+fvCskeg++++ trtgC a ++v+++++gkw+v+ + ++Hn mrna06133.1-v1.0-hybrid 35 EFYTLYAARMGFKVRIGQLYRSRTDGSVSARRFVCSKEGFQTS--------------TRTGCAALIRVQRRDSGKWVVDLFLKNHN 106 6*************************************876..............79************************* PP FAR1 87 Hela 90 H+l mrna06133.1-v1.0-hybrid 107 HDLG 110 *995 PP
2	FAR1	65.1	1.9e-20	187	262	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 ++Y++YA+++GF++r+ + +sk++g+i +r+fvCs+eg++++ +r+gC a +++k++++g+w+v++le++Hn mrna06133.1-v1.0-hybrid 187 QYYHAYAERTGFRIRIGQLFRSKHDGSISSRRFVCSREGFQHP--------------SRVGCGAFMRIKRQESGRWVVDRLEKHHN 258 69************************************999..............4899********************* PP FAR1 87 Hela 90 Hel mrna06133.1-v1.0-hybrid 259 HELE 262 96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.3E-16	35	110	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	5.2E-16	187	262	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.0E-26	414	506	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.794	689	725	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.9E-7	700	722	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.3E-6	700	727	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 805 aa Download sequence Send to blast
MLMPVMNNAS TNDEGESILE PYVGLAFDSA DGAREFYTLY AARMGFKVRI GQLYRSRTDG 60 SVSARRFVCS KEGFQTSTRT GCAALIRVQR RDSGKWVVDL FLKNHNHDLG PTEGNHSLIL 120 QQKILTAKPV EVVHRPKCKL IEEVEDGRPC PSGVITAKRS KLNGDEMQCE VEPSSGLKFN 180 SANEAYQYYH AYAERTGFRI RIGQLFRSKH DGSISSRRFV CSREGFQHPS RVGCGAFMRI 240 KRQESGRWVV DRLEKHHNHE LESQQEVQKK NLSVSKKFIE EENGGLDDED IVDINIGNLV 300 KKRRENHKTI HELESQQEVQ KKNLSVSKKF IWEENGGLDD EDIVEINSGN LVKKRRENHI 360 GSDWYSVLFD YFQTKQAEDT GFFYAVEDDY GTCMSIFWAD GRSRFSCSQF GDAIIFDTSY 420 RKGMYLVPFA TFIGINHNRQ PVLLGCALLA DESEKSFTWL FQTWLRAMSG HRPWSIIADQ 480 DDIIQQAIIN VFPGTHHRFS MWQMKAKQYE HLSSVHSSFQ FEYEKCINQS QTTDEFETAW 540 NSLLCRYGLK DNTWLKAMYE KRQCWVPLYL RATFFAGIPL SGNIESFFGT LVNGQTPLVE 600 FVPLYEKGLE RRREEELKEN FNCSILNAYL QTKEPVEEQC RRLYTLSVFR IFQKELLQSY 660 SYLGFKVYEE AAIVRYLVRK CGNDDDDKST VTIGTSNHNV RCSCQMFEFE GVLCRHVLRV 720 FQILEIKEVP SRYILRRWRK NAEYGLPLYS ESGGSPQEVN ASMVWSLREE ACKYIDAGAT 780 SLEKHKVAYE ILHEGRLRLG GPPR*

Sequence ? help Back to Top

Protein Sequence Length: 805 aa Download sequence Send to blast

MLMPVMNNAS TNDEGESILE PYVGLAFDSA DGAREFYTLY AARMGFKVRI GQLYRSRTDG  60
SVSARRFVCS KEGFQTSTRT GCAALIRVQR RDSGKWVVDL FLKNHNHDLG PTEGNHSLIL  120
QQKILTAKPV EVVHRPKCKL IEEVEDGRPC PSGVITAKRS KLNGDEMQCE VEPSSGLKFN  180
SANEAYQYYH AYAERTGFRI RIGQLFRSKH DGSISSRRFV CSREGFQHPS RVGCGAFMRI  240
KRQESGRWVV DRLEKHHNHE LESQQEVQKK NLSVSKKFIE EENGGLDDED IVDINIGNLV  300
KKRRENHKTI HELESQQEVQ KKNLSVSKKF IWEENGGLDD EDIVEINSGN LVKKRRENHI  360
GSDWYSVLFD YFQTKQAEDT GFFYAVEDDY GTCMSIFWAD GRSRFSCSQF GDAIIFDTSY  420
RKGMYLVPFA TFIGINHNRQ PVLLGCALLA DESEKSFTWL FQTWLRAMSG HRPWSIIADQ  480
DDIIQQAIIN VFPGTHHRFS MWQMKAKQYE HLSSVHSSFQ FEYEKCINQS QTTDEFETAW  540
NSLLCRYGLK DNTWLKAMYE KRQCWVPLYL RATFFAGIPL SGNIESFFGT LVNGQTPLVE  600
FVPLYEKGLE RRREEELKEN FNCSILNAYL QTKEPVEEQC RRLYTLSVFR IFQKELLQSY  660
SYLGFKVYEE AAIVRYLVRK CGNDDDDKST VTIGTSNHNV RCSCQMFEFE GVLCRHVLRV  720
FQILEIKEVP SRYILRRWRK NAEYGLPLYS ESGGSPQEVN ASMVWSLREE ACKYIDAGAT  780
SLEKHKVAYE ILHEGRLRLG GPPR*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna06133.1-v1.0-hybrid

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011462785.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7
Swissprot	Q9M8J3	0.0	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	A0A2P6QXH9	0.0	A0A2P6QXH9_ROSCH; Putative transcription factor FAR family
STRING	XP_004296979.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	0.0	FAR1-related sequence 7

Link Out ? help Back to Top
Phytozome	mrna06133.1-v1.0-hybrid

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]