PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna05956.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | Trihelix | ||||||||
Protein Properties | Length: 396aa MW: 45271.3 Da PI: 4.4336 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 47.3 | 5.6e-15 | 161 | 245 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmre.rgferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++e+ +L++a ++ r ++++l+ W+ev++k++e ++er+ +qC+++++ l+k+ykk++ + t +++s+++yf++++ mrna05956.1-v1.0-hybrid 161 WTEHETFVLLDAWGDRFLRRGKKSLRSEEWQEVAEKVSEvSKIERTDTQCRNRLDTLKKKYKKERLKFAE-TGGATSKWVYFKKMD 245 *************************************762678**********************99998.688999********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.7E-21 | 160 | 247 | No hit | No description |
PROSITE profile | PS50090 | 6.319 | 161 | 218 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-4 | 161 | 225 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MDDTEDDARY PPNSYGGNHP QGYDSAHQPP KLAARGGSFS RPDSHYDDDE DDEDEEDEEL 60 GEEEGHNGQN GYPSVNKDVG DDDDDDDELG DDDEDDDDEE DDKGKVFKRV DDDDMQKHPK 120 KRKLKSLISS YEFAPRIPAP LAPALPAPRQ SHGGRNALTD WTEHETFVLL DAWGDRFLRR 180 GKKSLRSEEW QEVAEKVSEV SKIERTDTQC RNRLDTLKKK YKKERLKFAE TGGATSKWVY 240 FKKMDMLMSS PQQQAGLSCG LDSGEYVFMN PRVYLNRANG LDEMRDSPGN SESAEGVEDE 300 SDGLPPKKRR FGRDTDERSS FRLLADSIQK FSDIYEKIEK SKRQKMVELE KMRMDFHRDL 360 EMEKRQIMER AQAEIAKMRQ AEDEENDVSA ENASG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 116 | 122 | KHPKKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna05956.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004302915.1 | 0.0 | PREDICTED: trihelix transcription factor ASIL2-like | ||||
TrEMBL | A0A2P6RWQ2 | 0.0 | A0A2P6RWQ2_ROSCH; Putative transcription factor MYB family | ||||
STRING | XP_004302915.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2441 | 34 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24490.1 | 1e-75 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna05956.1-v1.0-hybrid |