PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna05867.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 276aa    MW: 30995 Da    PI: 8.9821
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna05867.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.57.3e-115781126
                             --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                             ykt+lC++f r G C+yG+ C +aHg
  mrna05867.1-v1.0-hybrid 57 YKTRLCSNFKR-GRCHYGEACLYAHG 81
                             9**********.*************9 PP
2zf-CCCH19.91.3e-06114136426
                              ---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                              +lC+ f+  G C yG++C+F H+
  mrna05867.1-v1.0-hybrid 114 KLCKMFSNQGRCEYGEKCRFRHV 136
                              69******************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.03E-85387IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-135687IPR000571Zinc finger, CCCH-type
SMARTSM003567.6E-65682IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.3755783IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-85781IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596111138IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5112136IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-4112137IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-7114135IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MSNSRSSCQF FTPFLIEGKE FGAVSDIEHH QAFKKPRISE VGSDSTMAGR RYRWLHYKTR  60
LCSNFKRGRC HYGEACLYAH GVEELRNTLG GSQNEKGVLG RTEYGNHGIC DRLKLCKMFS  120
NQGRCEYGEK CRFRHVILKR IKDDESVITI SAGGSEGSIN GGYGQFGGKR SLGLDVDTNG  180
GSGGRHFRQH GSVAVGRGML SNTCIASESF ADEHAVLRKL CGYTTAETKY SKTYTISREM  240
QVRDGKFDWN ELEKMSRIYA DWIEEIPLVH RKVQC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna05867.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004305323.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like isoform X2
TrEMBLA0A2P6RWC11e-149A0A2P6RWC1_ROSCH; Putative transcription factor C3H family
STRINGXP_004305323.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15275712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.14e-15C3H family protein