PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna05847.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | CPP | ||||||||
Protein Properties | Length: 850aa MW: 93643.3 Da PI: 6.4161 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 30.1 | 9.4e-10 | 497 | 527 | 11 | 41 |
TCR 11 skClkkYCeCfaagkkCseeCkCedCkNkee 41 +C +YCeCfaag++C ++C+Ce+C Nk e mrna05847.1-v1.0-hybrid 497 KRCRDNYCECFAAGVFCLDSCSCENCYNKPE 527 68**************************975 PP | |||||||
2 | TCR | 31.7 | 3.1e-10 | 575 | 596 | 1 | 22 |
TCR 1 kekkgCnCkkskClkkYCeCfa 22 ++k+gCnCkkskClkkYCeC++ mrna05847.1-v1.0-hybrid 575 RHKRGCNCKKSKCLKKYCECYQ 596 589******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 6.3E-5 | 491 | 528 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 21.784 | 493 | 618 | IPR005172 | CRC domain |
Pfam | PF03638 | 8.3E-7 | 496 | 525 | IPR005172 | CRC domain |
SMART | SM01114 | 2.0E-9 | 575 | 639 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.0E-6 | 577 | 596 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 850 aa Download sequence Send to blast |
MIDGDDNVRI GIEIEGRRVE RQRERDVPNV VSVGFTTIPR LSVFYRALTL PPVSRKVFSD 60 FAAWKMDGSP ETNRVAAVAN SSPPQSSSPA VQESPFSNFL SNLTPINTVK SDSYSQRLVG 120 AFLPTPPVVF TSPRIDLERE TGYLEMNDIV EAGSNVDVYK ECNTTIVQSA SFKKEVQLCG 180 SSGCIDEYMA DPAKVDCTHS ADIQSGITAS KESNTEVHED IDGSTKSEAL TTSNQAEEDL 240 HLPSLKQIEA TVIERTDKNS VALVTRAQSR GQNTAKEVSQ HHRGIRRHLQ FETAVAHKNS 300 SFDSHKSLCS LRHDTANLRS ASKRINLKTL ASQINNKAFN SPQGVSCDTS QLSCLYESVR 360 SGQICSGIGL HLNSITQSTS MSSDVFSSRK STGCLSTPDQ MLEHDNLEHE SSSSFISAIP 420 QQNYSCMGDD QQGSQTAVHT TFSFYSTNGL PYLPCDSTDQ MLVDQDSVPF EELNASEGAN 480 KIEESNQLSE KRKRQEKRCR DNYCECFAAG VFCLDSCSCE NCYNKPEFED TVFDARQQIE 540 SRNPLAFAPR VVKHDFNSSP KIMEEADWTT PSSARHKRGC NCKKSKCLKK YCECYQLVIV 600 VLLTYSDVIP LSSPSYFLQA NVGCSAACRC DGCQNPCGTT ADQEYNRAEK WETHIADKLD 660 TIKCGNDCIK ATSMDTYSPS WEGLSVISNF TPLSNPCSST MVSSASSIMR NCTKNSQARL 720 QSSRLQPSGT GQLKRGRSPV IFTPQEFESK GPYQLSSDGA SYERTDDDIP ELLKEPSIPP 780 KVVKGSPNQK RVSPPQSRAE KLRSRSPKGL RSGRKFILQA MPSFPPLSPY SDSKAVNDTM 840 NDHEGTHNN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna05847.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011466742.1 | 0.0 | PREDICTED: protein tesmin/TSO1-like CXC 2 | ||||
TrEMBL | A0A2P6RWF0 | 0.0 | A0A2P6RWF0_ROSCH; Putative transcription factor Tesmin family | ||||
STRING | XP_004305318.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14277 | 14 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22780.1 | 1e-48 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | mrna05847.1-v1.0-hybrid |