PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna05847.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family CPP
Protein Properties Length: 850aa    MW: 93643.3 Da    PI: 6.4161
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna05847.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR30.19.4e-104975271141
                      TCR  11 skClkkYCeCfaagkkCseeCkCedCkNkee 41 
                               +C  +YCeCfaag++C ++C+Ce+C Nk e
  mrna05847.1-v1.0-hybrid 497 KRCRDNYCECFAAGVFCLDSCSCENCYNKPE 527
                              68**************************975 PP

2TCR31.73.1e-10575596122
                      TCR   1 kekkgCnCkkskClkkYCeCfa 22 
                              ++k+gCnCkkskClkkYCeC++
  mrna05847.1-v1.0-hybrid 575 RHKRGCNCKKSKCLKKYCECYQ 596
                              589******************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011146.3E-5491528IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163421.784493618IPR005172CRC domain
PfamPF036388.3E-7496525IPR005172CRC domain
SMARTSM011142.0E-9575639IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.0E-6577596IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 850 aa     Download sequence    Send to blast
MIDGDDNVRI GIEIEGRRVE RQRERDVPNV VSVGFTTIPR LSVFYRALTL PPVSRKVFSD  60
FAAWKMDGSP ETNRVAAVAN SSPPQSSSPA VQESPFSNFL SNLTPINTVK SDSYSQRLVG  120
AFLPTPPVVF TSPRIDLERE TGYLEMNDIV EAGSNVDVYK ECNTTIVQSA SFKKEVQLCG  180
SSGCIDEYMA DPAKVDCTHS ADIQSGITAS KESNTEVHED IDGSTKSEAL TTSNQAEEDL  240
HLPSLKQIEA TVIERTDKNS VALVTRAQSR GQNTAKEVSQ HHRGIRRHLQ FETAVAHKNS  300
SFDSHKSLCS LRHDTANLRS ASKRINLKTL ASQINNKAFN SPQGVSCDTS QLSCLYESVR  360
SGQICSGIGL HLNSITQSTS MSSDVFSSRK STGCLSTPDQ MLEHDNLEHE SSSSFISAIP  420
QQNYSCMGDD QQGSQTAVHT TFSFYSTNGL PYLPCDSTDQ MLVDQDSVPF EELNASEGAN  480
KIEESNQLSE KRKRQEKRCR DNYCECFAAG VFCLDSCSCE NCYNKPEFED TVFDARQQIE  540
SRNPLAFAPR VVKHDFNSSP KIMEEADWTT PSSARHKRGC NCKKSKCLKK YCECYQLVIV  600
VLLTYSDVIP LSSPSYFLQA NVGCSAACRC DGCQNPCGTT ADQEYNRAEK WETHIADKLD  660
TIKCGNDCIK ATSMDTYSPS WEGLSVISNF TPLSNPCSST MVSSASSIMR NCTKNSQARL  720
QSSRLQPSGT GQLKRGRSPV IFTPQEFESK GPYQLSSDGA SYERTDDDIP ELLKEPSIPP  780
KVVKGSPNQK RVSPPQSRAE KLRSRSPKGL RSGRKFILQA MPSFPPLSPY SDSKAVNDTM  840
NDHEGTHNN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna05847.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011466742.10.0PREDICTED: protein tesmin/TSO1-like CXC 2
TrEMBLA0A2P6RWF00.0A0A2P6RWF0_ROSCH; Putative transcription factor Tesmin family
STRINGXP_004305318.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF142771417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.11e-48Tesmin/TSO1-like CXC domain-containing protein