PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna05767.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 167aa MW: 19159.5 Da PI: 7.7731 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.4 | 3.2e-08 | 67 | 116 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 ++WT+eE+ l+ +v+ +G ++WktI + ++R+ +k +w+ + mrna05767.1-v1.0-hybrid 67 QKWTAEEE-ALLAGVATHGVDNWKTILEDSEfgsilTRRSNMKLKYKWRHW 116 78999886.5678****************9999**9999999999999865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-8 | 64 | 118 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.48E-10 | 64 | 123 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0022 | 65 | 119 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 7.90E-11 | 67 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MATKAHLHRR RALQIYWIGD SILSNNLIGQ KRRHLDEHRT QFLTLTMVSI VNNVNIEVSA 60 VESQKPQKWT AEEEALLAGV ATHGVDNWKT ILEDSEFGSI LTRRSNMKLK YKWRHWSRRP 120 SVNSPSMADE ALEEAESVSD TKEEDRDSET KKRKRMPAED TEPSTC* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna05767.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024177942.1 | 5e-37 | single myb histone 4-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF34552 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72740.2 | 6e-14 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna05767.1-v1.0-hybrid |