PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna05766.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 333aa    MW: 37637.3 Da    PI: 4.6158
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna05766.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.41.6e-084877231
                             SSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS
          Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartm 31
                             ++WT  E+e l+ +v+++  g+WktI ++ 
  mrna05766.1-v1.0-hybrid 48 KSWTSKEEEALAAGVQKHSAGNWKTILKYS 77
                             58************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.48E-1144101IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-84498IPR009057Homeodomain-like
PROSITE profilePS500906.764999IPR017877Myb-like domain
PfamPF139215.3E-650104No hitNo description
CDDcd116601.93E-105099No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MVDFAKSNYN NRRFLANFNG FVSAIVGFLR REGVEIEVLE LLIRKQHKSW TSKEEEALAA  60
GVQKHSAGNW KTILKYSKFA SYLAQKSSSD LWKKWETMTF RVSDEKLKPL SPKVKKIVAA  120
NLELEGINDR QSSAFDDHDQ EEKVERILEM EEDSTMSTKV KNDVDDVQNS ANAEEEEVKE  180
TERVSIMAEK EETSMMDAQS SADPSEAVRE TERIMKMKEF EDVKSMLSLA NLFMERFSPQ  240
NTNQVSDSVA TAFSQAVKES KRASEMAEGI DRFSTTSPPQ AEKETEVTSR MKEDTNQVPA  300
PAPAPPQAVS ETVEDTRSML LLLSEICERF ML*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna05766.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024177941.13e-81single myb histone 4-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.23e-11MYB_related family protein