PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna05722.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | LBD | ||||||||
Protein Properties | Length: 251aa MW: 27016.7 Da PI: 8.2674 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 101.4 | 8.5e-32 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++a+pe++r+ +++sl++eA+ r+ +Pv+Gavg+++ mrna05722.1-v1.0-hybrid 2 SCNGCRVLRKGCSESCILRPCLqwietPEAQGHATVFVAKFFGRAGLMSFISAVPESQRPVLFQSLLFEACGRTVNPVNGAVGLLW 87 6************************************************************************************* PP DUF260 82 klqqqleqlkaelall 97 ++++q++q+++e++l+ mrna05722.1-v1.0-hybrid 88 TGNWQVCQAAVETVLR 103 **********999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 20.052 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.0E-26 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MSCNGCRVLR KGCSESCILR PCLQWIETPE AQGHATVFVA KFFGRAGLMS FISAVPESQR 60 PVLFQSLLFE ACGRTVNPVN GAVGLLWTGN WQVCQAAVET VLRGGTLRPI PELVSGSGSG 120 LTPDEASEAD GTVCTDMWRL RDPTHNSGTS SRFTNSRSKT ASCSPTTKRK RPDGESLKAL 180 QHADLDLRLT PTLAFRPKPK PDTRRPGSPS MNSEESVVTT CFESNGFAEQ YPNPNGGVLG 240 SEIKLLNLFP * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna05722.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004288234.1 | 0.0 | PREDICTED: LOB domain-containing protein 38 | ||||
Swissprot | Q9SN23 | 2e-91 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | A0A2P6RNZ9 | 1e-170 | A0A2P6RNZ9_ROSCH; Putative transcription factor AS2-LOB family | ||||
STRING | XP_004288234.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF721 | 34 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 7e-94 | LOB domain-containing protein 38 |
Link Out ? help Back to Top | |
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Phytozome | mrna05722.1-v1.0-hybrid |