PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna05644.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family AP2
Protein Properties Length: 644aa    MW: 71617.9 Da    PI: 6.4799
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna05644.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.18.1e-12332388155
                      AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                              s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +++Aaka++ a++k++g
  mrna05644.1-v1.0-hybrid 332 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqSRKGRQ-GGYDMEQKAAKAYDLAALKYWG 388
                              78*******************87776664446655.77***99*************98 PP
2AP234.26.3e-11422466855
                      AP2   8 wdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              ++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  mrna05644.1-v1.0-hybrid 422 RHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 466
                              7899*******988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.68E-17332396No hitNo description
PfamPF008474.7E-9332388IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-13332398IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-11333397IPR001471AP2/ERF domain
SMARTSM003809.2E-21333402IPR001471AP2/ERF domain
PROSITE profilePS5103216.871333396IPR001471AP2/ERF domain
PRINTSPR003674.9E-6334345IPR001471AP2/ERF domain
PROSITE profilePS5103216.239414474IPR001471AP2/ERF domain
CDDcd000185.46E-21422476No hitNo description
Gene3DG3DSA:3.30.730.105.2E-15422474IPR001471AP2/ERF domain
SMARTSM003804.8E-25422480IPR001471AP2/ERF domain
PfamPF008477.6E-6422466IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-14422475IPR016177DNA-binding domain
PRINTSPR003674.9E-6456476IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MKSMSNDNTN SSNNWLDFSL SPNMKLDVPP PSDPHLQISQ SSSPSIPNAF FNSPPHFNYG  60
IYYGVDQGDH TGLYSALPMM PIKSDGSLCI MEALNRSHHP QGMVTSSSSS TPKLEDFFGG  120
ATMGTHNHYG NNDREAMALS LDSMFYQQIP THHHHHEPNN NSQNLLNQDH ESQQQDYSSY  180
YSGLKTHEMM FEDHQKEQAQ IEHFNNVQNS SLGSLNHNIS DMKNWVSRNF SANNNNGVLE  240
QNMIGCMGDN GAESAGSIGS MPYGDLQCLS LSMSPGSQSS CVTGTQQISP TLTTNTECVA  300
TIDSSKKRGP EKAEQKQIVH RKSLDTFGQR TSQYRGVTRH RWTGRYEAHL WDNSCKKEGQ  360
SRKGRQGGYD MEQKAAKAYD LAALKYWGPS THINFPLENY QKELEEMNNM SRQEYVAHLR  420
SRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ EEAAEAYDIA AIKFRGLNAV TNFDITRYDV  480
ERIMASNTLL AGENAKRNKA LPRPGDEATK QISNGEQSIT VAVKNTNEVE EWKMMQLFQS  540
SEQVPDHQNV IQADHGAEES PTMGTTTHLS NASSLVTSLN SSREGSPDKS SQPSFFGMPP  600
TATKFFSSSG INNNTVSSWI PAVESRPDLS LSHMPFFAAW TDA*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna05644.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004289368.20.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ84Z021e-127CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A3Q8TD880.0A0A3Q8TD88_FRAAN; Transcription factor AP21
STRINGXP_004289368.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-97AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]