PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna05636.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRF
Protein Properties Length: 577aa    MW: 62506.2 Da    PI: 6.4395
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna05636.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.72.4e-24203247145
                      WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                              d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  mrna05636.1-v1.0-hybrid 203 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHINRGRHRSRKPVEG 247
                              79****************************************985 PP
2QLQ59.21.2e-20138174137
                      QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                              ++FT++Q+ +L++Q+l+yKyL+an+PvP++Ll +++k
  mrna05636.1-v1.0-hybrid 138 GPFTPSQWIELEHQALIYKYLNANAPVPSNLLIPLKK 174
                              59*******************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.5E-11138174IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.187139174IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.6E-14139172IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.287203247IPR014977WRC domain
PfamPF088797.3E-21204246IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MDFGVVCMDM DCLMGPEPGE GATAHSHVSG PETKPGHGSG LSFKQQRSWP VEDAWRVSKT  60
PKPDDMSSPR TMPLPQEPPP QLLMRSSSLA PPRQEQMLSF ASNKSDVTFL SKDGGASSDF  120
AFYQRMPAPY ARNAAARGPF TPSQWIELEH QALIYKYLNA NAPVPSNLLI PLKKSLYHYG  180
LSGPSPNSLS WGSFHLGYSG STDPEPGRCR RTDGKKWRCS RDAVADQKYC ERHINRGRHR  240
SRKPVEGQTG HGASRRANSK EVAPPVTSSK PTSVSGTLQP QFKSLEPPPP ADAAAANSSV  300
DAFANRMQDP QGFTVMSASS IKPESNASCF SVPKRDFPMV ESSQSEFGLV STDSLLNPSH  360
RSSYIPKDFG GSFLDFTDQE TQDQNLLHQF IDDWPKDQSS QSVVTWPEDI KSDWTRLSMA  420
IPMASDFSSS SSSPTQDKLG LSPLRLSREF EPTQNLGVSN DQCEPSDQQT NWVPISWRSS  480
MGGPLGEVLT NTSSCVNSKN SSSNTSPLNL LNEGWDGSSQ LESSPTGVLQ KSTFCSLSNS  540
SSGCSPRADN KKSQDGASLY DDVLGSTLGS SSVPSL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna05636.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4886163e-44AM488616.1 Vitis vinifera contig VV78X030262.6, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004289366.10.0PREDICTED: growth-regulating factor 1-like
TrEMBLA0A2P6RPB90.0A0A2P6RPB9_ROSCH; Putative transcription factor interactor and regulator C3H-WRC/GRF family
STRINGXP_004289366.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20853481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.11e-101growth-regulating factor 1