PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna05612.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 432aa    MW: 47806.6 Da    PI: 6.7811
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna05612.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.42.2e-12174220455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  mrna05612.1-v1.0-hybrid 174 DHIMAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYVKQLQ 220
                              699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.383170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-10174220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.5E-17174232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.2E-16174233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.89E-13175224No hitNo description
SMARTSM003531.6E-14176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MDASSAKWFS DLGMDDYNFI QEGFTAQDIA TALGGNFKQS FSNESYSSYS TLTTQNTPNT  60
TLSGGSSINE TNSQTSFERP AKLVKTNNWN SGITEHVSPK PSSNSSSSHI LSFENANLNS  120
SPPSKPHQKF SNGFDTLKPK EEAPSQICMQ FENQGYGTNK RPYSMTRTPS HAQDHIMAER  180
KRREKLSQRF IALSAIVPGL KKMDKASVLG DAIKYVKQLQ ESVKVLEEQT KKRTVESVVF  240
VKKSQLVSSD DDTSSCDENF DSRCSDEPLP QIEARVSEKD VLIRIHCENQ KGYVVKVLSE  300
LENLQLSVVN SSVLPFGKST LDITIVAQMD DEFNMTVTDL AKSLRVALLK FMPDVERTSA  360
LRLKVRTSSV LCLLTPDWPA TSFQANLDQS WCFPSRASIR QENLSPASPG RRETVLEACA  420
VVREGEKPSP A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-13174237869Transcription factor MYC2
5gnj_B4e-13174237869Transcription factor MYC2
5gnj_E4e-13174237869Transcription factor MYC2
5gnj_F4e-13174237869Transcription factor MYC2
5gnj_G4e-13174237869Transcription factor MYC2
5gnj_I4e-13174237869Transcription factor MYC2
5gnj_M4e-13174237869Transcription factor MYC2
5gnj_N4e-13174237869Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178183ERKRRE
2179184RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna05612.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004288301.10.0PREDICTED: transcription factor bHLH18-like
TrEMBLA0A2P6RPI10.0A0A2P6RPI1_ROSCH; Putative transcription factor bHLH family
STRINGXP_004288301.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.19e-71bHLH family protein