PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna05610.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 377aa    MW: 41910 Da    PI: 6.5997
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna05610.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.54.3e-12161207455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               h  +Er+RR+++ ++f  L  l+P +     kK++Ka++L  A++Y+k+Lq
  mrna05610.1-v1.0-hybrid 161 DHVLAERKRREKLSQRFIALSALVPGL-----KKMDKASVLGDAIKYVKQLQ 207
                              58899**********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.459157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-16161218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.52E-13162208No hitNo description
SuperFamilySSF474592.09E-16162220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-10162207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-13163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MEDPTFLNQY EMNFHLDYSL EDLNFRSLSA ESYSSYPDFT PPQNDVDERP AKQPKNNHSN  60
WNSCTTTHDH KTTVPRASSS ASSHLISFDN SNSSAYGSLD CTTTVKPKNE VQGSGGNLNS  120
IPTLISQGNS YDPQTCSPNR AYGQGIKRAA TVTRSPLHAQ DHVLAERKRR EKLSQRFIAL  180
SALVPGLKKM DKASVLGDAI KYVKQLQERM KILEEQAAKK TVESVVFVKR TQYSADDDIS  240
SSDENFDSCS DQPLPEIEAR VSDKEVLIRI HCEKKKGCLA NILHEIERLN LTILNSSFLP  300
FGNSTLDITV VSQMDVEYSM TVKELVRSKA LYTSLSCTNA EKTTLPAEQW YTAMAGFLLQ  360
GFVYVGGGFF PSFLRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-13161216863Transcription factor MYC2
5gnj_B3e-13161216863Transcription factor MYC2
5gnj_E3e-13161216863Transcription factor MYC2
5gnj_F3e-13161216863Transcription factor MYC2
5gnj_G3e-13161216863Transcription factor MYC2
5gnj_I3e-13161216863Transcription factor MYC2
5gnj_M3e-13161216863Transcription factor MYC2
5gnj_N3e-13161216863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165170ERKRRE
2166171RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna05610.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011466489.10.0PREDICTED: transcription factor bHLH18-like
RefseqXP_011466492.10.0PREDICTED: transcription factor bHLH18-like
SwissprotQ9T0723e-61BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A2P6RPH50.0A0A2P6RPH5_ROSCH; Putative transcription factor bHLH family
STRINGEMJ075501e-150(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-62bHLH family protein