PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna05518.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

G2-like

Protein Properties

Length: 489aa MW: 53312.3 Da PI: 5.8751

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna05518.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.2	3.7e-33	255	309	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +pr+rWtpeLHerFveav++L G+ekAtPk++l++m+v+gLt++hvkSHLQkYRl mrna05518.1-v1.0-hybrid 255 RPRMRWTPELHERFVEAVKKLDGAEKATPKAVLKVMNVEGLTIYHVKSHLQKYRL 309 59****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.007	252	312	IPR017930	Myb domain
SuperFamily	SSF46689	1.56E-17	254	309	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.1E-31	254	310	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.4E-25	256	310	IPR006447	Myb domain, plants
Pfam	PF00249	4.8E-10	257	308	IPR001005	SANT/Myb domain
Pfam	PF14379	2.7E-23	345	392	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0009005	anatomy	root
PO:0007134	developmental stage	sporophyte vegetative stage

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence Send to blast
MKVGLSSAIM SLHGVSSVTQ SGTTKGITQS YCTSLSPAHD FLGCESEGRN SVAHECSSTR 60 LSPFMRTESF SSPTNMRESS LQRVKSTFSR SSVFCTSLYQ SSSSTSETSR QLGNLPFLPH 120 PPTYSQSNSA VDSTSPLLLS QDMSNQYDDE QSDYLMKDFL NMTGDASDGS FHEIGCGSDT 180 MALTEQLEFQ FLSDQLDIAI TDNGENPRLD EIYDIPRASS EPTIELTCSK SCGSTAPLVD 240 ALSSHPSPGP SSAHRPRMRW TPELHERFVE AVKKLDGAEK ATPKAVLKVM NVEGLTIYHV 300 KSHLQKYRLA KYMPEKKEDK KASSSEEKKA ASSGNESDGR RKGSIHITEA LRMQMEVQKQ 360 LHEQLEVQRS LQLRIEEHAK YLEKILEEQQ KAGSALLSPQ ALSSLTTNSL KDSEQQPPPS 420 ACISASQPAA SDSSSPDSPL SLKHKAAACS ESEAHAYTKK LRIEEKPDDP VVENPSATVT 480 TTPTTTSQ*

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence Send to blast

MKVGLSSAIM SLHGVSSVTQ SGTTKGITQS YCTSLSPAHD FLGCESEGRN SVAHECSSTR  60
LSPFMRTESF SSPTNMRESS LQRVKSTFSR SSVFCTSLYQ SSSSTSETSR QLGNLPFLPH  120
PPTYSQSNSA VDSTSPLLLS QDMSNQYDDE QSDYLMKDFL NMTGDASDGS FHEIGCGSDT  180
MALTEQLEFQ FLSDQLDIAI TDNGENPRLD EIYDIPRASS EPTIELTCSK SCGSTAPLVD  240
ALSSHPSPGP SSAHRPRMRW TPELHERFVE AVKKLDGAEK ATPKAVLKVM NVEGLTIYHV  300
KSHLQKYRLA KYMPEKKEDK KASSSEEKKA ASSGNESDGR RKGSIHITEA LRMQMEVQKQ  360
LHEQLEVQRS LQLRIEEHAK YLEKILEEQQ KAGSALLSPQ ALSSLTTNSL KDSEQQPPPS  420
ACISASQPAA SDSSSPDSPL SLKHKAAACS ESEAHAYTKK LRIEEKPDDP VVENPSATVT  480
TTPTTTSQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	9e-25	255	312	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	9e-25	255	312	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	9e-25	255	312	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	9e-25	255	312	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	9e-25	255	312	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	9e-25	255	312	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	9e-25	255	312	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	9e-25	255	312	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00354	DAP	Transfer from AT3G13040	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna05518.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011467504.1	0.0	PREDICTED: protein PHR1-LIKE 1
Refseq	XP_011467505.1	0.0	PREDICTED: protein PHR1-LIKE 1
Swissprot	Q949U2	1e-148	PHL6_ARATH; Myb family transcription factor PHL6
TrEMBL	A0A2P6RZF1	0.0	A0A2P6RZF1_ROSCH; Putative transcription factor MYB-HB-like family
STRING	XP_004303787.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13469	19	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	1e-117	G2-like family protein

Link Out ? help Back to Top
Phytozome	mrna05518.1-v1.0-hybrid

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]