PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna05500.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HB-other
Protein Properties Length: 1246aa    MW: 140959 Da    PI: 8.3571
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna05500.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox36.39.5e-12757757
                             --HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                 Homeobox  7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                              t+ ql++Le+++e+++yps++++e  A+  gLt +qV+ WF  rR +ek+
  mrna05500.1-v1.0-hybrid  7 KTSLQLQALESFYEEEKYPSRTAMECHATVFGLTYKQVRGWFVERRRREKR 57
                             6889**********************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003898.5E-6162IPR001356Homeobox domain
PROSITE profilePS5007113.345158IPR001356Homeobox domain
CDDcd000862.40E-5348No hitNo description
SuperFamilySSF466893.12E-11561IPR009057Homeodomain-like
PfamPF000464.2E-9757IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.1E-11858IPR009057Homeodomain-like
PROSITE profilePS5082711.939384443IPR018501DDT domain
SMARTSM005715.4E-8384443IPR018501DDT domain
PfamPF027913.4E-9389439IPR018501DDT domain
PfamPF156121.9E-5666698IPR028942WHIM1 domain
PfamPF156131.0E-10794867IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1246 aa     Download sequence    Send to blast
MEKSQKKTSL QLQALESFYE EEKYPSRTAM ECHATVFGLT YKQVRGWFVE RRRREKRKRT  60
AGELLSGRNG VGVAATRVAK RSDSSQRTKA AASGLKCKKG AIKARIQRLR NPDYLLKKVF  120
RKDGPPIAVE FDALPSRALW KSTDSQNEEL NSSAPRKRHG AGKDLMTMRK QGVGKDLMTV  180
RRHNGGKDLM KMKQHGCGKD LMTMKKHGGG KGLMTVWRAN NPDADARDFL VDMGLANGEV  240
THVSRKPQTR SRRLQQQKSV PGRLQSKLQE KRKRFVKRRE VEYNEVSNQK LPSKEKCELS  300
LEGSGSEDHS DKIAMLVDDE ELELRELQAR PISLGCLNHF TTNGDHGCSL CKGSFVISDS  360
LVKFPPSSVK MKQPFHMQPW DSSPEIAKKL FKVFHFLYTY VVVLDLSSFT VDEFAQAFHE  420
KDSLLLGKIH VALLKLLLSH VQAELSSGSM HHLSKSCNFL AFIHSQLENQ KSTLEFWERS  480
LNPLTWTEIL RQVLVAAGFG SKQGAMRKEV LSKEMSLMVK YGLHSGTLKG ELFRVLLEQG  540
INGLKVSDLA KSLQIAELNV SSRIDDLESL ISSTLSSDIT LFEKISSSTY RLRINSSEDE  600
VEELQSDSED SGTVDDDLSD SGICSSDDDS GCNSGNPNIR KSIHVNRHRS KTNMRKVHTE  660
IDESHPGEVW LLGLMEGEYS DLSIEEKLNA IVALIDLLHA GSNMRMEDPA NSIAECIPNS  720
LHSGSGAKIK RLSAKQHSVP RSSWVHAGNM DGVNGDHTRS LFHPIDSSAS ISKFYGERYS  780
TKGKYCGSDL HPMQSVFLGS DRRYSRYWLF LGPCNAYDPG HRRVYFESSE DGHWEVIDTE  840
EALCALLSIL DDRGKREAFL IESLEKRLTF LCEAMSNTTA SSDGSENLTQ SDRSELDNAR  900
EDTYSPISDV DNNSSETVND SVPLNGTEVP EVRKKGEELQ QKWKQIQAFD SWLWNSFYLD  960
LNSVKHGKRS YFDTLTRCES CHDLYWRDEK HCRICHATFE LHFDQEEMFA IHVATCREKE  1020
TSTTFPEHKV LSSQIQSLKA AIHAIESVMP EDALLGAWKK SAHKLWVKRL RRTSSLSELL  1080
QVLTDFVKAI NEDWLYKCKI AQGSCKLGDE IISSFASMPH TTSAVALWLA KLDDLIAPYI  1140
KGPCSERRQG TTIRGFEMAV VCLKLRFAFL FSGFLIWLLR IRFRAIEESW TFRVHTSVIS  1200
VKRAQSKTFY PLFSCKEQHS VILFPEMEDS DFVNALFVLV LRRER*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14954ERRRRE
25055RRRREK
35157RRREKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. May prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing. {ECO:0000250|UniProtKB:F4HY56}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna05500.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011467497.10.0PREDICTED: uncharacterized protein LOC101301509 isoform X1
SwissprotF4JRF50.0RLT3_ARATH; Homeobox-DDT domain protein RLT3
TrEMBLA0A2P6RZC90.0A0A2P6RZC9_ROSCH; Putative transcription factor & chromatin remodeling DDT family
STRINGXP_004303777.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61181519
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12750.10.0Homeodomain-like transcriptional regulator