PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | mrna05451.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 234aa MW: 26247.9 Da PI: 10.4448 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 57.9 | 1.3e-18 | 39 | 86 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ++e snr+vtfskR++g++ KA ELS L++ae a i++s +g+++ + mrna05451.1-v1.0-hybrid 39 KVEAASNRHVTFSKRKKGLFNKAAELSLLTGAETAAIVVSGNGRMFGF 86 67899***************************************9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 23.282 | 30 | 90 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.3E-25 | 30 | 89 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.93E-23 | 31 | 106 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.5E-17 | 32 | 52 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.4E-18 | 40 | 86 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.5E-17 | 52 | 67 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.5E-17 | 67 | 88 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 234 aa Download sequence Send to blast |
MAKTNNNNVL SSSVVELNNS NELPPVKKTK GRRRVEIKKV EAASNRHVTF SKRKKGLFNK 60 AAELSLLTGA ETAAIVVSGN GRMFGFGSSS CDAVIHRYLT ESNPQVALES DRRNKNVNIA 120 VNSAHLAKLR QQLLEARRQL EEEKKRATMI QQRKQEAGGA VPAKLWWEEE MMDQSPKELE 180 SYSEALHRLK SDVERRAQQK IMNLPCSYTS LMDGRVAIGE NYMNNNNSNM KNM* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | mrna05451.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004305781.1 | 1e-172 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A2P6RZ65 | 1e-130 | A0A2P6RZ65_ROSCH; Putative transcription factor MADS-type1 family | ||||
STRING | XP_004305781.1 | 1e-171 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G36590.1 | 2e-21 | M-type_MADS family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | mrna05451.1-v1.0-hybrid |