PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna05448.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | ERF | ||||||||
Protein Properties | Length: 392aa MW: 43345 Da PI: 4.7479 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.9 | 3e-19 | 117 | 166 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++a +++++g mrna05448.1-v1.0-hybrid 117 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARRIRG 166 69*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.47E-32 | 117 | 175 | No hit | No description |
SMART | SM00380 | 2.7E-37 | 117 | 180 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-32 | 117 | 176 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.9E-22 | 117 | 175 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.092 | 117 | 174 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.9E-12 | 118 | 166 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 118 | 129 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 140 | 156 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070483 | Biological Process | detection of hypoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MCGGAIISGF IPPTRSRRVT ADFLWPDLKK SSSGKRFSSG GRPLRSEIFG LDDDFEADFQ 60 EFKDDSDVDD DEDMLDSKPF AFSAGKPSPA ARGPKTVKSV ECNSQAEKSA KRKRKNQYRG 120 IRQRPWGKWA AEIRDPRKGV RVWLGTFNTA EEAARAYDAE ARRIRGKKAK VNFPEEAPRA 180 STKRAVKANP QKVLPKTNLD NMQSNLNQNV NFVNGSDQEY YNSMSFLEEK PQTNNFGYMD 240 SVLTNGDFGM KSSTVADPAA LYFSSDQGSN SFDCSDFGWG EQGSRTPEIS SVLSSVLEES 300 ENSLFLEDAN PTKKLKANPE GLVPAENNVA PKTLSEELSA FEMKYCQTPY LEGSWDTSID 360 TFLNGDMTQD GCNPVDLWSF DDLPSMAGGV F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 6e-21 | 117 | 174 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 8e-21 | 116 | 176 | 13 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the activation of hypoxic gene expression and in ethylene response. Partially redundant with RAP2-2. Acts as a downstream regulator in the ethylene signaling pathway. {ECO:0000269|PubMed:22020282, ECO:0000269|PubMed:22530619}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00204 | DAP | Transfer from AT1G53910 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna05448.1-v1.0-hybrid |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by hypoxia but not by ethylene. {ECO:0000269|PubMed:22020282}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011467483.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-12-like | ||||
Refseq | XP_011467484.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-12-like | ||||
Refseq | XP_011467485.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-12-like | ||||
Swissprot | Q9SSA8 | 3e-96 | RA212_ARATH; Ethylene-responsive transcription factor RAP2-12 | ||||
TrEMBL | A0A3Q8TD86 | 0.0 | A0A3Q8TD86_FRAAN; Transcription factor ERF56 | ||||
STRING | XP_004303745.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4808 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.3 | 3e-86 | related to AP2 12 |
Link Out ? help Back to Top | |
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Phytozome | mrna05448.1-v1.0-hybrid |