PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna05411.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 529aa    MW: 58213.1 Da    PI: 4.6884
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna05411.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.51.7e-133176449
                             -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                   SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                             e    r+vtfskR+ g++ KA  LS L++ e+a +++s+ g+++ +
  mrna05411.1-v1.0-hybrid 31 EAPDHRHVTFSKRKRGLFQKAGQLSSLTGSEIAAVVVSECGRVFGF 76
                             55668************************************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.2592080IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-202079IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.63E-192195IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-132242IPR002100Transcription factor, MADS-box
PfamPF003196.5E-153076IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-134257IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-135778IPR002100Transcription factor, MADS-box
SuperFamilySSF497853.32E-21368523IPR008979Galactose-binding domain-like
PfamPF085476.3E-24371467IPR013857NADH:ubiquinone oxidoreductase intermediate-associated protein 30
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MAPVIAKSTS NSVGTKKKTL GRRKVEMKKV EAPDHRHVTF SKRKRGLFQK AGQLSSLTGS  60
EIAAVVVSEC GRVFGFGTPS CDAVADRYLA GLSPNQNGND QNHGISFRDG IGSIIVESTP  120
STSSSYYSQN DNVHYQENGA VVGPMIAETI PSKGSPIRVL EDNILDNRNL DLAPNGNAHY  180
QNNNAVVESM IVEITSFCSN FPQSDGVVIG SKIDETTPLS SSCSEFLEGD GYLNLMNDTV  240
SPAEPCPYQE GFDGSEAGEM SEEMIEEMIE EMMNEKVDEV PRCNEFLTNL VRALLPTTTS  300
SYYTSLLVME DQDELIMDNR GLGSCYFNPY EDWRNSEERK MSRFRSLLQA TKKALTWNVE  360
DLVPPSERFI FNFKSKDELK KWHLYSDSEY GGLSSASLEI SDTGNGSNGI FSGNLSSDFA  420
EGSKWKMNRS GFCGMRSKKF NGFIDLEPYD TISLKVKGDG RSYISTIPLS RYLPTWRGNV  480
IDAEMEMNPA RVVGMSLSVN AEGGVPGARS GPGDFKLEID WIKALRTE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mnm_A2e-13584480PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
1mnm_B2e-13584480PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna05411.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011468587.10.0PREDICTED: myocyte-specific enhancer factor 2C-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF984733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-18AGAMOUS-like 62