PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna05411.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 529aa MW: 58213.1 Da PI: 4.6884 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 41.5 | 1.7e-13 | 31 | 76 | 4 | 49 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 e r+vtfskR+ g++ KA LS L++ e+a +++s+ g+++ + mrna05411.1-v1.0-hybrid 31 EAPDHRHVTFSKRKRGLFQKAGQLSSLTGSEIAAVVVSECGRVFGF 76 55668************************************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 22.259 | 20 | 80 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.0E-20 | 20 | 79 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.63E-19 | 21 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.9E-13 | 22 | 42 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.5E-15 | 30 | 76 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.9E-13 | 42 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.9E-13 | 57 | 78 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF49785 | 3.32E-21 | 368 | 523 | IPR008979 | Galactose-binding domain-like |
Pfam | PF08547 | 6.3E-24 | 371 | 467 | IPR013857 | NADH:ubiquinone oxidoreductase intermediate-associated protein 30 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 529 aa Download sequence Send to blast |
MAPVIAKSTS NSVGTKKKTL GRRKVEMKKV EAPDHRHVTF SKRKRGLFQK AGQLSSLTGS 60 EIAAVVVSEC GRVFGFGTPS CDAVADRYLA GLSPNQNGND QNHGISFRDG IGSIIVESTP 120 STSSSYYSQN DNVHYQENGA VVGPMIAETI PSKGSPIRVL EDNILDNRNL DLAPNGNAHY 180 QNNNAVVESM IVEITSFCSN FPQSDGVVIG SKIDETTPLS SSCSEFLEGD GYLNLMNDTV 240 SPAEPCPYQE GFDGSEAGEM SEEMIEEMIE EMMNEKVDEV PRCNEFLTNL VRALLPTTTS 300 SYYTSLLVME DQDELIMDNR GLGSCYFNPY EDWRNSEERK MSRFRSLLQA TKKALTWNVE 360 DLVPPSERFI FNFKSKDELK KWHLYSDSEY GGLSSASLEI SDTGNGSNGI FSGNLSSDFA 420 EGSKWKMNRS GFCGMRSKKF NGFIDLEPYD TISLKVKGDG RSYISTIPLS RYLPTWRGNV 480 IDAEMEMNPA RVVGMSLSVN AEGGVPGARS GPGDFKLEID WIKALRTE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mnm_A | 2e-13 | 5 | 84 | 4 | 80 | PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR) |
1mnm_B | 2e-13 | 5 | 84 | 4 | 80 | PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR) |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna05411.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011468587.1 | 0.0 | PREDICTED: myocyte-specific enhancer factor 2C-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9847 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-18 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | mrna05411.1-v1.0-hybrid |