PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna05400.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family Trihelix
Protein Properties Length: 379aa    MW: 40844.9 Da    PI: 10.4554
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna05400.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.54.7e-1570157186
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                              +W+++ + +Liea  e+  +l+rg+lk+++W+ev++ +      ++  ++ +qCk++++ ++k+yk +k  +  +     s++p+f
  mrna05400.1-v1.0-hybrid  70 CWSESATAVLIEAWGERYLELSRGNLKQKHWKEVADIVssreDYGKTPKTDIQCKNRIDTVKKKYKLEKSKMLAG--AGPSKWPFF 153
                              7*************************************85444455566778*****************999997..45568**** PP

                 trihelix  83 dqle 86 
                               +l+
  mrna05400.1-v1.0-hybrid 154 AKLD 157
                              **98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.7E-2568159No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MEEDDEMHSP ASAGSGSPTS PTTNGRITVT VAVPSQIPAS AQHSPPRNNQ LTLALPSQGV  60
RSSGGGREDC WSESATAVLI EAWGERYLEL SRGNLKQKHW KEVADIVSSR EDYGKTPKTD  120
IQCKNRIDTV KKKYKLEKSK MLAGAGPSKW PFFAKLDHLI GATGKGTPGS GGGPVPPGFM  180
SKNHKIPMGM PVGVRGGGGG VGQFVPKHLQ QLQKANAKKR GPPPVEWDSD SSREVSPVSA  240
DSFPPPPVFE TKRPRTAGRG ANAGLGRGGA GRGGVGKEIR GREGGGEKKS GWGDSMRELT  300
QAMLRFGEAY EHAETAKLQQ VVEMEKQRMK FAKELELQRM QYFMKTQMEI SHGRRNGNAS  360
NHHRSVNNNN TNNNSDSN*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna05400.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004305769.10.0PREDICTED: trihelix transcription factor ASIL2
SwissprotQ9LJG85e-95ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A2P6RYZ71e-153A0A2P6RYZ7_ROSCH; Uncharacterized protein
STRINGXP_004305769.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79193044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.18e-52sequence-specific DNA binding transcription factors