PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna05392.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 461aa    MW: 52717.3 Da    PI: 8.7647
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna05392.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.68e-07409428525
                              --SGGGGTS--TTTTT-SS-S CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                               Cr++a+ G C yG++CkF+H
  mrna05392.1-v1.0-hybrid 409 VCRHYAQ-GRCYYGGNCKFSH 428
                              7******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.720.302.0E-777124IPR003034SAP domain
SuperFamilySSF689067.88E-778124No hitNo description
PfamPF020375.4E-989123IPR003034SAP domain
SMARTSM005130.002589123IPR003034SAP domain
PROSITE profilePS508009.56789123IPR003034SAP domain
PROSITE profilePS5010314.831404431IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6405429IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-4405430IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-6406432IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-4408428IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MAEHFSETGG SDPEYDSDDS LNDPSYSTLE ETHAKFSNLS VKTKSKTRIV EVIDVEEEPD  60
GEEVVVPELN QIDAKSYEHV HKIIQDNQIE KMKVEHCKLY LRKNGLRLTG NKDTLIQRIK  120
EHLEILNGGG EKKYPASSFV LNCKGDACTG DVVMFEQNVY EMFDIASRSG RGPPCGTRTV  180
AGRIVKESYG AAKQQHTFTI EVLWSKGEKP LPPLHPLLIK GRNLYRLKTL RQRWEDEGER  240
QKALMEKHLR GSLARSDRET RVQEKDMRKT LRTNWVSRKE EPIKNQSQLN STSTFISPVQ  300
PHQSYPLVNP ANLHQSVGPG NTNRGRHLGL STDSAKPETL THHFKKPATQ PRDPQSCLVT  360
VEHGKVTTQP QVKQHSLMQD WYFSQASQRQ PLTIVTNCLL TSTQAQKQVC RHYAQGRCYY  420
GGNCKFSHEM RENHKERMEE RQPCNYGNSY NERRFYNPNL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna05392.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004305763.10.0PREDICTED: zinc finger CCCH domain-containing protein 62-like
TrEMBLA0A2P6RYW90.0A0A2P6RYW9_ROSCH; Putative transcription regulator SAP family
STRINGXP_004305763.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116522224