PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna05318.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family Trihelix
Protein Properties Length: 357aa    MW: 39336.6 Da    PI: 9.7088
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna05318.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix65.89.2e-2151142187
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 
                              +W+++e+ aLi+ +r+++ +lrrg+lk+++W++v++++     +    ++++qC++k+e+l+kry+ + +++++   ++ +s++++
  mrna05318.1-v1.0-hybrid  51 CWSHDETVALIDSYRDKWYSLRRGNLKATHWQDVADAVsrrcPAASPAKTAVQCRHKMEKLRKRYRTEIQRARSMpLARFTSSWVH 136
                              8*******************************99998865556667799*************************9779999***** PP

                 trihelix  82 fdqlea 87 
                              f++++a
  mrna05318.1-v1.0-hybrid 137 FKRMDA 142
                              ****85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.3E-2150143No hitNo description
SMARTSM005955.2E-1159148IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MASSPPSSPH DGSPLLLSDP PHAVPLALPA PPSSSSAPPP PSTSRRLPPP CWSHDETVAL  60
IDSYRDKWYS LRRGNLKATH WQDVADAVSR RCPAASPAKT AVQCRHKMEK LRKRYRTEIQ  120
RARSMPLARF TSSWVHFKRM DAMEKGPAAM KNENSDSPVD DGEDEENDEE EDQDQELYEE  180
LRYGSNMKSM SKMYRNGVGI GGSGGGSSVG GGNGGFRIRI PTGVSIAQPG NKVYPKMDQK  240
FGMNSHPGTS YATAKVMREC NNNVGGRGGG GLGKRERERD PVAEMVSAIK VLGDGFVRTE  300
QTKIEMAREI ETMRMEMEMK RTEMILESQQ RIVDAFAKAV SEKKKKKAKR MPSPEV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1264270GGRGGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna05318.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004307247.10.0PREDICTED: trihelix transcription factor ASIL2
TrEMBLA0A498JES21e-173A0A498JES2_MALDO; Uncharacterized protein
STRINGXP_004307247.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46382838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.13e-65Trihelix family protein