PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna05180.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 99aa MW: 11080.2 Da PI: 11.5284 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 71.4 | 7.9e-23 | 51 | 97 | 1 | 47 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 k+i+n s rqvtf kRr g+lKKA ELSvLCd e aviifs tg+l+ mrna05180.1-v1.0-hybrid 51 KKIDNLSARQVTFLKRRRGLLKKAGELSVLCDCEYAVIIFSATGNLF 97 68******************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 24.474 | 43 | 98 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.6E-23 | 43 | 98 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.01E-21 | 44 | 97 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-22 | 45 | 65 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.5E-21 | 52 | 97 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-22 | 65 | 80 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-22 | 80 | 98 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 99 aa Download sequence Send to blast |
MEVVAQRDGV AYPRGKKRFH KFTSLSSQVP QRTRKIAIAM TKPARNKIKI KKIDNLSARQ 60 VTFLKRRRGL LKKAGELSVL CDCEYAVIIF SATGNLFA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-15 | 44 | 97 | 2 | 55 | MEF2C |
5f28_B | 4e-15 | 44 | 97 | 2 | 55 | MEF2C |
5f28_C | 4e-15 | 44 | 97 | 2 | 55 | MEF2C |
5f28_D | 4e-15 | 44 | 97 | 2 | 55 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that mediates floral transition in response to vernalization. Promotes inflorescence fate in apical meristems. Acts in a dosage-dependent manner. Probably involved in the transduction of RLK-mediated signaling (e.g. IMK3 pathway). Together with AP1 and SVP, controls the identity of the floral meristem and regulates expression of class B, C and E genes. When associated with SOC1, mediates effect of gibberellins on flowering under short-day conditions, and regulates the expression of LEAFY (LFY), which links floral induction and floral development. Confers inflorescence characteristics to floral primordia and early flowering. {ECO:0000269|PubMed:12451184, ECO:0000269|PubMed:12609028, ECO:0000269|PubMed:12881501, ECO:0000269|PubMed:14716314, ECO:0000269|PubMed:16679456, ECO:0000269|PubMed:18339670, ECO:0000269|PubMed:18466303, ECO:0000269|PubMed:18694458, ECO:0000269|PubMed:19656343}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna05180.1-v1.0-hybrid |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by vernalization in a FLC-independent manner. Repressed by the floral homeotic genes AP1, LFY and SEP3 in emerging floral meristems to establish a floral identity and prevent inflorescence fate. Up-regulated at the shoot apex by SOC1. {ECO:0000269|PubMed:12609028, ECO:0000269|PubMed:14716314, ECO:0000269|PubMed:17428825, ECO:0000269|PubMed:18339670, ECO:0000269|PubMed:18694458}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004299728.1 | 2e-30 | PREDICTED: MADS-box protein JOINTLESS-like | ||||
Refseq | XP_011464657.1 | 2e-30 | PREDICTED: MADS-box protein JOINTLESS-like | ||||
Refseq | XP_011464658.1 | 2e-30 | PREDICTED: MADS-box protein JOINTLESS-like | ||||
Swissprot | O82794 | 3e-21 | AGL24_ARATH; MADS-box protein AGL24 | ||||
TrEMBL | A0A2P6PH14 | 3e-28 | A0A2P6PH14_ROSCH; Putative transcription factor MADS-MIKC family | ||||
STRING | XP_004299728.1 | 7e-30 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24540.1 | 1e-23 | AGAMOUS-like 24 |
Link Out ? help Back to Top | |
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Phytozome | mrna05180.1-v1.0-hybrid |