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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | mrna05178.1-v1.0-hybrid | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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| Family | ARR-B | ||||||||
| Protein Properties | Length: 687aa MW: 75058.1 Da PI: 6.6653 | ||||||||
| Description | ARR-B family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 85.1 | 6.9e-27 | 213 | 264 | 1 | 53 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53
kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkY
mrna05178.1-v1.0-hybrid 213 KPRVVWSVELHQQFVGAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKY 264
79*******************.******************************* PP
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| 2 | Response_reg | 77.5 | 4.6e-26 | 35 | 143 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHH CS
Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeee 84
vl+vdD+p+ +++l+++l+ y ev+ ++ +e al ll+e++ +D+++ D+ mp+mdG++ll++i e +lp+i+++a + ++
mrna05178.1-v1.0-hybrid 35 VLVVDDDPTCLMILEKMLRTCLY-EVTKCKRAEIALSLLRENKngYDVVISDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADDGKS 118
89*********************.***************999999**********************6654.8************* PP
HHHHHHHTTESEEEESS--HHHHHH CS
Response_reg 85 dalealkaGakdflsKpfdpeelvk 109
+ + + Ga d+l Kp+ +e+l +
mrna05178.1-v1.0-hybrid 119 VVMKGVTHGACDYLIKPVRIEALKN 143
*********************9986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PIRSF | PIRSF036392 | 1.1E-168 | 14 | 676 | IPR017053 | Response regulator B-type, plant |
| SuperFamily | SSF52172 | 1.37E-34 | 32 | 155 | IPR011006 | CheY-like superfamily |
| Gene3D | G3DSA:3.40.50.2300 | 8.1E-42 | 32 | 169 | No hit | No description |
| SMART | SM00448 | 3.6E-30 | 33 | 145 | IPR001789 | Signal transduction response regulator, receiver domain |
| PROSITE profile | PS50110 | 42.337 | 34 | 149 | IPR001789 | Signal transduction response regulator, receiver domain |
| Pfam | PF00072 | 4.0E-23 | 35 | 143 | IPR001789 | Signal transduction response regulator, receiver domain |
| CDD | cd00156 | 4.20E-27 | 36 | 148 | No hit | No description |
| SuperFamily | SSF46689 | 6.63E-18 | 210 | 266 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS51294 | 11.13 | 210 | 269 | IPR017930 | Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 2.2E-26 | 212 | 265 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 2.5E-23 | 213 | 265 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 1.3E-6 | 215 | 264 | IPR001005 | SANT/Myb domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
| GO:0009414 | Biological Process | response to water deprivation | ||||
| GO:0010082 | Biological Process | regulation of root meristem growth | ||||
| GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
| GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
| GO:0048367 | Biological Process | shoot system development | ||||
| GO:0080022 | Biological Process | primary root development | ||||
| GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
| GO:0080113 | Biological Process | regulation of seed growth | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| Plant Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PO Term | PO Category | PO Description | ||||
| PO:0009005 | anatomy | root | ||||
| PO:0007134 | developmental stage | sporophyte vegetative stage | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 687 aa Download sequence Send to blast |
MNLQNGRGSV STASSSGAWK SGETVPDQFP AGLRVLVVDD DPTCLMILEK MLRTCLYEVT 60 KCKRAEIALS LLRENKNGYD VVISDVHMPD MDGFKLLEHI GLEMDLPVIM MSADDGKSVV 120 MKGVTHGACD YLIKPVRIEA LKNIWQHVVR KKKNEWKDVE QSGSVDEGDR QQKPCEEPDY 180 SSSANEGTWK NSKKRKDEDE DAEDRDDTST LKKPRVVWSV ELHQQFVGAV NQLGIDKAVP 240 KKILELMNVP GLTRENVASH LQKYSPHKLM EQKYRLYLRR LSGVSQHQSN LSNSFISSQE 300 ASFGAMSSLN GIDLQTLAAT GQLPAQSLAT LQAAGLGRST AKSGIPMPLV DQRNLFSFEN 360 PKLRFAEGQQ HHSSGKPMNL LHGIPTTMEA KQLANLHQSA QSLGAVNMQV NPHGVQNSSL 420 YMIGQPQSRG QIMNESTGTH VPRLPSSIGQ PMVSNGIPTG VIGRNGISDG GRGTGYNPVP 480 QNSSMLNFPL NNTPELTGNS YTLGSTQGMS SLTPKGSFPE EVNSEIKRSG GLVPSYDIFN 540 ELQQHKSNDW NLQNVGLTFD ASHHANSVHG GLDSSGLVHQ GFPSNQRNGQ SRNSSNVGKP 600 MFPMGASTDQ GHMQNTSQHL SNNLIVDNTV RIKSERLSDA SQNSFFHDQY GQDDLMSALL 660 KQQQGGVGPA ENEFDFDGYS LDNIPV* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1irz_A | 3e-19 | 212 | 264 | 4 | 56 | ARR10-B |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Regulates SHY2 by binding to its promoter (PubMed:19039136). Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). {ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:11691951, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:19039136}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | mrna05178.1-v1.0-hybrid |
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000269|PubMed:20605455}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_004295112.1 | 0.0 | PREDICTED: two-component response regulator ARR1-like isoform X1 | ||||
| Swissprot | Q940D0 | 0.0 | ARR1_ARATH; Two-component response regulator ARR1 | ||||
| TrEMBL | A0A2P6QYU1 | 0.0 | A0A2P6QYU1_ROSCH; Two-component response regulator | ||||
| STRING | XP_004295112.1 | 0.0 | (Fragaria vesca) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF3958 | 34 | 58 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G16857.2 | 0.0 | response regulator 1 | ||||
| Link Out ? help Back to Top | |
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| Phytozome | mrna05178.1-v1.0-hybrid |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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