PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna05175.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GATA
Protein Properties Length: 154aa    MW: 16513.7 Da    PI: 10.1482
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna05175.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.31.1e-183771135
                     GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                             C  Cgt+kTplWR gp g+k+LCnaCG++ rkk++
  mrna05175.1-v1.0-hybrid 37 CFDCGTSKTPLWRGGPAGPKSLCNACGIRSRKKRR 71
                             99******************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577164.75E-133170No hitNo description
PROSITE profilePS5011412.3873167IPR000679Zinc finger, GATA-type
SMARTSM004012.2E-143182IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.9E-163571IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.47E-133696No hitNo description
PfamPF003201.2E-163771IPR000679Zinc finger, GATA-type
PROSITE patternPS0034403762IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MLDPCEKLSD QGSESEDMNM IKNPNEGSSE EGQKRTCFDC GTSKTPLWRG GPAGPKSLCN  60
ACGIRSRKKR RAILGINKTG PSGGGNSSAD ENRKGKKSSN NKQLGDGLKQ RLLALGREVL  120
MQRSTVERQR RKLGEEEQAA VLLMALSYGS VSA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00335DAPTransfer from AT3G06740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna05175.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004295111.11e-107PREDICTED: GATA transcription factor 15-like
SwissprotQ8LG105e-49GAT15_ARATH; GATA transcription factor 15
TrEMBLA0A2P6QYT32e-93A0A2P6QYT3_ROSCH; Putative transcription factor C2C2-GATA family
STRINGXP_004295111.11e-106(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.12e-51GATA transcription factor 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]