PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna05167.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MYB | ||||||||
Protein Properties | Length: 384aa MW: 42796.7 Da PI: 5.2194 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.8 | 1e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWT+eEde+l ++++++G g+W++ ++ g+ R++k+c++rw +yl mrna05167.1-v1.0-hybrid 14 RGRWTAEEDEILTNYIQLHGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 8*******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 55.5 | 1.3e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T+eE+e +v++++ lG++ W++Ia+ ++ gRt++++k++w+++l mrna05167.1-v1.0-hybrid 67 RGNITQEEEETIVKLHTALGNR-WSLIAAQLP-GRTDNEIKNYWNSHL 112 7999******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-22 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.655 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.03E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.48E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.099 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.88E-10 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0051555 | Biological Process | flavonol biosynthetic process | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MGRAPCCEKV GLKRGRWTAE EDEILTNYIQ LHGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRTDLRRGNI TQEEEETIVK LHTALGNRWS LIAAQLPGRT DNEIKNYWNS HLSRKIYTFT 120 KLMGNECLIP TMINNVSKTA NAKSKRKGRT SRSTMKNKNK LNKNVTVPAS FPQVIKQAYV 180 NDVFESLTRE NAGQVETSPL MGSGCWSPKE KDGNEEEVET IRMLGGVQGS CLDITAAGMS 240 SSTTTAICVA NNGEKEALDP SECVDSDASV NHKPSGKTTA IGFKEQRGNE VMDFTDDHEV 300 TIKSDHQGIW SSNIEGSCDE MYAFSSPLNA AFDDHEWLDW DWLGGDGGGG LQCHNNEELD 360 LWDEGEVRIP WLWESGNVDD QRN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-23 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00598 | PBM | Transfer from AT5G49330 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna05167.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FR828553 | 0.0 | FR828553.1 Rosa hybrid cultivar mRNA for putative MYB transcription factor (myb2 gene), cultivar Yellow Island. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004295109.1 | 0.0 | PREDICTED: myb-related protein 330 | ||||
TrEMBL | A0A2P6QYV0 | 0.0 | A0A2P6QYV0_ROSCH; Putative transcription factor MYB-HB-like family | ||||
TrEMBL | F2QKX3 | 0.0 | F2QKX3_ROSHC; Putative MYB transcription factor | ||||
STRING | XP_004295109.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49330.1 | 6e-76 | myb domain protein 111 |
Link Out ? help Back to Top | |
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Phytozome | mrna05167.1-v1.0-hybrid |