PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna05160.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | CAMTA | ||||||||
Protein Properties | Length: 155aa MW: 17762.4 Da PI: 10.3976 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 97.9 | 7.9e-31 | 26 | 105 | 3 | 81 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevl 81 +e k rwl+++ei+a+L n++ ++++ ++ + p+sg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LK + + mrna05160.1-v1.0-hybrid 26 EEaKGRWLRPNEIHALLYNYKYFTIHVKPVNLPPSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKSRSRADV 105 45599********************************************************************9874433 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 43.304 | 21 | 153 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.5E-31 | 24 | 140 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.0E-26 | 27 | 106 | IPR005559 | CG-1 DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MDKPLVGSEI HGFHTMQDLD VDTIMEEAKG RWLRPNEIHA LLYNYKYFTI HVKPVNLPPS 60 GTIVLFDRKM LRNFRKDGHN WKKKKDGKTV KEAHEHLKSR SRADVRNYVK VRTPAQINSG 120 GHRSAALLPG SKQEVHLELL LAGRLDGDEF RSRD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna05160.1-v1.0-hybrid |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004301509.1 | 2e-62 | PREDICTED: MATH domain and coiled-coil domain-containing protein At3g58270-like | ||||
Swissprot | O23463 | 8e-44 | CMTA5_ARATH; Calmodulin-binding transcription activator 5 | ||||
TrEMBL | A0A1I9LRY6 | 6e-50 | A0A1I9LRY6_ARATH; Calmodulin-binding transcription activator | ||||
TrEMBL | A0A1S3C8Z3 | 6e-50 | A0A1S3C8Z3_CUCME; LOW QUALITY PROTEIN: calmodulin-binding transcription activator 5 | ||||
STRING | XP_004301509.1 | 7e-62 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF34891 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16940.1 | 1e-54 | calmodulin binding;transcription regulators |
Link Out ? help Back to Top | |
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Phytozome | mrna05160.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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