PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna05159.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family CAMTA
Protein Properties Length: 973aa    MW: 108963 Da    PI: 8.1552
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna05159.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-154.91.7e-1715420072118
                     CG-1  72 kLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118
                              + +vg+ e +++yYah+e+ ptf rrcywlL+++le+ivlvhy+e++
  mrna05159.1-v1.0-hybrid 154 RQRVGNEERIHVYYAHGEDSPTFVRRCYWLLDKSLEHIVLVHYRETQ 200
                              6689****************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143723.99860205IPR005559CG-1 DNA-binding domain
SMARTSM010763.2E-6108200IPR005559CG-1 DNA-binding domain
PfamPF038595.7E-14154198IPR005559CG-1 DNA-binding domain
PfamPF018331.0E-5424510IPR002909IPT domain
Gene3DG3DSA:2.60.40.108.4E-4424513IPR013783Immunoglobulin-like fold
SuperFamilySSF812961.82E-15425511IPR014756Immunoglobulin E-set
CDDcd002044.76E-15584718No hitNo description
Gene3DG3DSA:1.25.40.201.8E-16609722IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.91E-17620721IPR020683Ankyrin repeat-containing domain
PfamPF127962.5E-7621688IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.857626691IPR020683Ankyrin repeat-containing domain
SMARTSM002482.4E-6659688IPR002110Ankyrin repeat
PROSITE profilePS5008812.155659691IPR002110Ankyrin repeat
SMARTSM002484400698728IPR002110Ankyrin repeat
PROSITE profilePS500966.742807833IPR000048IQ motif, EF-hand binding site
SMARTSM0001588822844IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.181823852IPR000048IQ motif, EF-hand binding site
SMARTSM000150.097845867IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.048846870IPR000048IQ motif, EF-hand binding site
PfamPF006120.019847867IPR000048IQ motif, EF-hand binding site
SMARTSM0001511925947IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.206927955IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 973 aa     Download sequence    Send to blast
MEEALPIGAA GVDLSRRPHF NIVADKRSKA DVRTRVKVRA SLRSPPYGAG EGTPPPQRTP  60
AASSTTFPPW RCGRPSVLHP SALARLHPRR LQQRPRPLPL PGESVFFQFT ARSTLFEVLG  120
DLAGKPEKNG LAGDGKWSGT LLESSGVEAC RRRRQRVGNE ERIHVYYAHG EDSPTFVRRC  180
YWLLDKSLEH IVLVHYRETQ EVQGPATPVN SNSNSSSVSD PSAPWRLSEE LDSGAKNSYY  240
GGENELLESG SGSTVNNHEQ RLHDINTLEW DELLVTYDSR GDKVSGFDQQ NQLVGNGTIS  300
GGTSGLAAEV SSFGNLLNSS ARTGSIHFDL PDSNYVQTLE GEVNSNAQRR DSVVKGPSNS  360
PNILGNDGLR SQDSFGRWIN QIMTDPSGSV DDPVLDSSFI AAQSSFTSPA MEHIQSSVPE  420
QIFIITDVSP SWAFSNEKTK ILITGFFHQE FLDLAKSNLL CICGDVCIPA EIVQVGVYRC  480
FIPPHVAGLV NLFISLDGHK PISQVLNFEY RSPVTSNSVV PSEENKWEEF QLQMRLANLL  540
FSSSKSLSIV SSKVSPYTLK EAKKFSHRTS HISNSWQYLI KSIEDNNTPL PVAKDSLFEL  600
ILKNRLKDWL LEKVLDSSKT KEYDSHGQGV IHLCAILDYT WAVRLFSWSG LSLDFRDRRG  660
WTALHWAAYH GREKMVAVLL SAGAKPNLVT DPTSENPGGC TVADIASMNG YDGLAAYLSE  720
KALVEQFKDM SLAGNVSGSL QTNTNYYGNS ENLSEEDLYL KDTLTAYQTA ADAAARIQAA  780
IRENTLKLKT KAVQYSTPED EARSIIAALK IQHAFRHYDT RKKMAAAARI QYRFRTWKMR  840
QEFLNMRRQA VKIQAAFRAF QTRRQYQKIL WGVGVLEKAV LRWRLKRKGL RGLQVDPIES  900
NGDEKQESDT EEDFYRNSRK QAEERVERSV VRVQAMFRSK KAQQEYRRMK LTHNEAELEY  960
DDFFDPDNSM RG*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00435DAPTransfer from AT4G16150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna05159.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004295103.10.0PREDICTED: calmodulin-binding transcription activator 5
SwissprotO234630.0CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBLA0A2P6QYW40.0A0A2P6QYW4_ROSCH; Putative transcription factor CG1-CAMTA family
STRINGXP_004295103.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42883459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Ye J, et al.
    Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes.
    Plant Cell, 2009. 21(12): p. 3868-84
    [PMID:20023198]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  3. Lan Y,Liu X,Fu Y,Huang S
    Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips.
    PLoS Genet., 2018. 14(11): p. e1007789
    [PMID:30418966]