PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna05087.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 289aa    MW: 33053.9 Da    PI: 10.5115
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna05087.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.71.8e-1739131199
                              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                              ffk+   +  ++++ l++p  f ++ +++ ++   l+le +s  sW+v +  +k+++ ++l++GW+eF ++n L + +f+vF++d+
  mrna05087.1-v1.0-hybrid  39 FFKII--KPGFNTKHLRIPPAFRKHVSHELTTRAILKLEKSSESSWTVIV--SKTGRDIYLKDGWQEFLRDNSLGDSEFLVFRYDK 120
                              67777..55666777*******7555555567779***************..********************************99 PP

                              SSEE..EEEEE-S CS
                       B3  87 rsefelvvkvfrk 99 
                              ++ f  ++ +f+k
  mrna05087.1-v1.0-hybrid 121 HMHF--TINIFDK 131
                              9999..9999987 PP

2B352.11.2e-162062871198
                              HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                       B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                               ks+++ +p +f +e+   + ++++ ++ ++s  +++v+l    + ++++l++GW++F ++n+L++gD+++F+l++  e +++v++
  mrna05087.1-v1.0-hybrid 206 KKSRMVAIPTRFYKEMV--PSRNFDKIFLTTSKGKFTVTL--YTCADTMMLSGGWSSFRNDNQLQVGDMCIFELVK--ENTMKVHI 285
                              4556679******8884..5577888888999999*****..99999**************************986..66689*** PP

                              E- CS
                       B3  97 fr 98 
                              fr
  mrna05087.1-v1.0-hybrid 286 FR 287
                              98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.8E-2233133IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-2035133IPR015300DNA-binding pseudobarrel domain
CDDcd100172.09E-1437130No hitNo description
PROSITE profilePS5086311.77337132IPR003340B3 DNA binding domain
SMARTSM010191.5E-1239132IPR003340B3 DNA binding domain
PfamPF023621.3E-1539131IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.9E-21193287IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.2E-21194287IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.011196288IPR003340B3 DNA binding domain
CDDcd100171.71E-17199287No hitNo description
SMARTSM010192.6E-7201288IPR003340B3 DNA binding domain
PfamPF023623.3E-14206288IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009553Biological Processembryo sac development
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MPRITNRNKN KNKATVRRAS TSLSFHVGGV EEEENGPTFF KIIKPGFNTK HLRIPPAFRK  60
HVSHELTTRA ILKLEKSSES SWTVIVSKTG RDIYLKDGWQ EFLRDNSLGD SEFLVFRYDK  120
HMHFTINIFD KNCVERVNIA NLRTSEASTF PDSSERPLAR PPTGNHRYEL SAEAAKGLKS  180
EGEHLPRLAA AAAFRSKFPY FTKVLKKSRM VAIPTRFYKE MVPSRNFDKI FLTTSKGKFT  240
VTLYTCADTM MLSGGWSSFR NDNQLQVGDM CIFELVKENT MKVHIFRN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna05087.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011461740.10.0PREDICTED: B3 domain-containing protein Os01g0723500-like
TrEMBLA0A2P6QZ611e-145A0A2P6QZ61_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004296236.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14202819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18000.11e-19VERDANDI