PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna05087.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | B3 | ||||||||
Protein Properties | Length: 289aa MW: 33053.9 Da PI: 10.5115 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 54.7 | 1.8e-17 | 39 | 131 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 ffk+ + ++++ l++p f ++ +++ ++ l+le +s sW+v + +k+++ ++l++GW+eF ++n L + +f+vF++d+ mrna05087.1-v1.0-hybrid 39 FFKII--KPGFNTKHLRIPPAFRKHVSHELTTRAILKLEKSSESSWTVIV--SKTGRDIYLKDGWQEFLRDNSLGDSEFLVFRYDK 120 67777..55666777*******7555555567779***************..********************************99 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 ++ f ++ +f+k mrna05087.1-v1.0-hybrid 121 HMHF--TINIFDK 131 9999..9999987 PP | |||||||
2 | B3 | 52.1 | 1.2e-16 | 206 | 287 | 11 | 98 |
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ks+++ +p +f +e+ + ++++ ++ ++s +++v+l + ++++l++GW++F ++n+L++gD+++F+l++ e +++v++ mrna05087.1-v1.0-hybrid 206 KKSRMVAIPTRFYKEMV--PSRNFDKIFLTTSKGKFTVTL--YTCADTMMLSGGWSSFRNDNQLQVGDMCIFELVK--ENTMKVHI 285 4556679******8884..5577888888999999*****..99999**************************986..66689*** PP E- CS B3 97 fr 98 fr mrna05087.1-v1.0-hybrid 286 FR 287 98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.8E-22 | 33 | 133 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.12E-20 | 35 | 133 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.09E-14 | 37 | 130 | No hit | No description |
PROSITE profile | PS50863 | 11.773 | 37 | 132 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.5E-12 | 39 | 132 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-15 | 39 | 131 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.9E-21 | 193 | 287 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.2E-21 | 194 | 287 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.011 | 196 | 288 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.71E-17 | 199 | 287 | No hit | No description |
SMART | SM01019 | 2.6E-7 | 201 | 288 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.3E-14 | 206 | 288 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009553 | Biological Process | embryo sac development | ||||
GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MPRITNRNKN KNKATVRRAS TSLSFHVGGV EEEENGPTFF KIIKPGFNTK HLRIPPAFRK 60 HVSHELTTRA ILKLEKSSES SWTVIVSKTG RDIYLKDGWQ EFLRDNSLGD SEFLVFRYDK 120 HMHFTINIFD KNCVERVNIA NLRTSEASTF PDSSERPLAR PPTGNHRYEL SAEAAKGLKS 180 EGEHLPRLAA AAAFRSKFPY FTKVLKKSRM VAIPTRFYKE MVPSRNFDKI FLTTSKGKFT 240 VTLYTCADTM MLSGGWSSFR NDNQLQVGDM CIFELVKENT MKVHIFRN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna05087.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011461740.1 | 0.0 | PREDICTED: B3 domain-containing protein Os01g0723500-like | ||||
TrEMBL | A0A2P6QZ61 | 1e-145 | A0A2P6QZ61_ROSCH; Putative transcription factor B3-Domain family | ||||
STRING | XP_004296236.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14202 | 8 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18000.1 | 1e-19 | VERDANDI |
Link Out ? help Back to Top | |
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Phytozome | mrna05087.1-v1.0-hybrid |