PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna05066.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 485aa    MW: 53325.2 Da    PI: 9.27
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna05066.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.66.1e-34304362159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              ldDgy+WrKYGqK vk+s++prsYYrCt+agC vkk+vers++dp++v++tYeg+H+h+
  mrna05066.1-v1.0-hybrid 304 LDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSDDPSIVVTTYEGQHTHP 362
                              59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-35289364IPR003657WRKY domain
SuperFamilySSF1182905.36E-30296364IPR003657WRKY domain
PROSITE profilePS5081133.281299364IPR003657WRKY domain
SMARTSM007742.6E-41304363IPR003657WRKY domain
PfamPF031061.1E-27305362IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MAKPRKRRPT WLSQKLIPVH TVPISTLAPA KPVKNPALTD SGPHPNRGPM PRPHLMLGTV  60
PTRRHGPYKT PDRQTPVISL QIRSGKRPCT SSNGREEYVL LIFKTPMDGS QELRNNNTTT  120
DLPPPSSSSM ANSTLFSDHE IPMIPNTTFS SLSGFFDSEA ERGSFLDLLG NSEYASLFDF  180
GTQTTPSDSM TMMMMPPQQQ RVAQPSPVSS TVPESGTNSE ALNSGATTTA PTTPNSSSIS  240
SSSNEAHAAN NNEEQTTTKT VEEDEDADQD PDKTQKQLKP KKKNQKRQRE PRFAFMTKSE  300
VDNLDDGYRW RKYGQKAVKN SPYPRSYYRC TTAGCGVKKR VERSSDDPSI VVTTYEGQHT  360
HPSPITPRGS MGMAPLPSEL SGHVFSGAGY GVVPHHYQQQ QQQQQQHLHS YIYNSSPSLN  420
VTTTTSSAPS YGFNPASFPG LFQERYGNIG GHNSSNSAAS NLLRDHGLLQ DMLPSQIRKE  480
TKEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-29294364777Probable WRKY transcription factor 4
2lex_A1e-29294364777Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna05066.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004295061.10.0PREDICTED: probable WRKY transcription factor 48
SwissprotQ9FGZ47e-60WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBLA0A1S5SLA30.0A0A1S5SLA3_FRAVE; WRKY transcription factor 22
STRINGXP_004295061.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.13e-55WRKY DNA-binding protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]