PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna04949.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 170aa MW: 19848.4 Da PI: 10.6072 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 46.4 | 5e-15 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n+s r tf kR++g++KK EL +LC+++++ +i+s+ mrna04949.1-v1.0-hybrid 11 ITNNSARRATFRKRKEGMMKKLRELTTLCGIDACAVIYSP 50 89************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 16.904 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.5E-22 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 3.03E-28 | 2 | 85 | No hit | No description |
PRINTS | PR00404 | 1.1E-8 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.94E-24 | 3 | 94 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.9E-16 | 11 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-8 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-8 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MARKKVRIAY ITNNSARRAT FRKRKEGMMK KLRELTTLCG IDACAVIYSP FDSQPEVWPS 60 PFGVKHVLEK FKNMSLIEKS QKMLNQESFL RELISKKQIQ LKKLRKENKE KQMRRVMFES 120 LTLGVPQFQH LNLMDMGVLQ QLIYQKLDEI DGKTKNLNEK VIDNENQTA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RKKVRIAYITNNSARRATFRKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna04949.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004308515.1 | 1e-123 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A2P6SF33 | 1e-74 | A0A2P6SF33_ROSCH; Putative transcription factor MADS-type1 family | ||||
STRING | XP_004308515.1 | 1e-122 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF452 | 33 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05860.2 | 3e-40 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna04949.1-v1.0-hybrid |