PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna04911.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 238aa    MW: 26526.4 Da    PI: 5.2289
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna04911.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.42.3e-1591140355
                      AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              ++GVr+++ +g++ AeIrdp++ g   r++lg++  ae+A  a+++a+ k++g
  mrna04911.1-v1.0-hybrid  91 FRGVRRRP-WGKYSAEIRDPKKKG--MRVWLGTYERAEDAGLAYDRAAFKMRG 140
                              8*******.**********96643..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.48E-2890150No hitNo description
PROSITE profilePS5103222.37990148IPR001471AP2/ERF domain
SMARTSM003802.5E-3390154IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-3090149IPR001471AP2/ERF domain
PfamPF008478.8E-1091140IPR001471AP2/ERF domain
SuperFamilySSF541716.02E-2191149IPR016177DNA-binding domain
PRINTSPR003674.1E-1391102IPR001471AP2/ERF domain
PRINTSPR003674.1E-13130150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MSTETESFSN SNWAMLESIR QHLLADDFEF DIPSPFFADS PAQSTSSSSS VEVSSNDSEI  60
MEEPNQMFTS KLEVEVVESE HNAPTSGQRN FRGVRRRPWG KYSAEIRDPK KKGMRVWLGT  120
YERAEDAGLA YDRAAFKMRG SKAKLNFPHL IGTHDMEVGR VLPKRASPEP SSPSSEDGSP  180
KPKRRRRSGV DSAATKDKLD EAAKEFHHVF QVDSITFGDE DMVLLSPSEC SDILSFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2789148160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna04911.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004308504.11e-175PREDICTED: ethylene-responsive transcription factor 13-like
SwissprotQ8L9K11e-39ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A3S8T9201e-170A0A3S8T920_FRAAN; Transcription factor ERF68
STRINGXP_004308504.11e-174(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.18e-36ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]