PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | mrna04888.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 191aa MW: 21718 Da PI: 4.1519 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32.9 | 1.1e-10 | 108 | 180 | 14 | 90 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 ++ ++p++f+e+h + ++++++ ++g + ++ k+ +++ +++GW + ++a +++ gD+++ +++g+++ mrna04888.1-v1.0-hybrid 108 SIPTIPRPFFERHVVQ--FKTDIMVVGPDGTERVIRT--FKNNNSVRFGNGWGNLCSAYDIQPGDMLMMEVIGHKRY 180 5569*********644..5679***************..77778899***********************9986655 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.02E-6 | 1 | 38 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.7E-7 | 1 | 40 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.109 | 1 | 40 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.0E-4 | 102 | 188 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.45E-13 | 108 | 190 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.5E-10 | 110 | 190 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.73E-7 | 111 | 173 | No hit | No description |
PROSITE profile | PS50863 | 8.501 | 112 | 188 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 191 aa Download sequence Send to blast |
MCFTRGWEQF RNYHQVRGGD FLVFTYEGGV SFEVDLLDME GVGRTEFEER NEQITDPDMV 60 EMSSDDEDDD IDEEASEHDT ERHDVEGEGD EEVEAANGMS CIMTVGNSIP TIPRPFFERH 120 VVQFKTDIMV VGPDGTERVI RTFKNNNSVR FGNGWGNLCS AYDIQPGDML MMEVIGHKRY 180 RLAITRPRAC * |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | mrna04888.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
STRING | XP_004308495.1 | 1e-139 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF34616 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G53310.1 | 5e-06 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | mrna04888.1-v1.0-hybrid |