PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna04810.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | ERF | ||||||||
Protein Properties | Length: 275aa MW: 29760.2 Da PI: 5.0681 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.1 | 4.6e-18 | 87 | 136 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr ++ +g+Wv+eIr+p++ + r++lg++ tae+Aa+a++ a+++++g mrna04810.1-v1.0-hybrid 87 TFRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAARAIKG 136 59****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 7.19E-21 | 87 | 145 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.2E-35 | 87 | 150 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.392 | 87 | 144 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-31 | 87 | 145 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.1E-12 | 88 | 136 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.50E-31 | 88 | 146 | No hit | No description |
PRINTS | PR00367 | 7.3E-10 | 88 | 99 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.3E-10 | 110 | 126 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root | ||||
PO:0007134 | developmental stage | sporophyte vegetative stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MAKKINIESD PHGNLHTSSS SSSSTSIVTT TTSHDSVIDK RTESDQNSEK LSSSTGQEDN 60 NGSNNEPNTK KRQRSSNDHG DGGKHPTFRG VRMRSWGKWV SEIREPRKKS RIWLGTYPTA 120 EMAARAHDVA ARAIKGASAY LNFPELAQTL PQPASASPKD IQAAAAKAAS ALEEMKKCGA 180 EVEEEEEQAT QPSKDEETTT TTANTSTSTS NSTACSSSSS SVDYDDKLFD LPDLFMDGTN 240 GSYQFCFSSS SSSSWHLCAA DTGFRLEEPF SWEY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-17 | 80 | 144 | 7 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00312 | DAP | Transfer from AT2G44940 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna04810.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004307005.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF034-like | ||||
Swissprot | Q8LBQ7 | 9e-66 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | A0A3Q8TBF3 | 0.0 | A0A3Q8TBF3_FRAAN; Transcription factor ERF21 | ||||
STRING | XP_004307005.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF192 | 34 | 263 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 5e-39 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna04810.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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