PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna04800.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB
Protein Properties Length: 326aa    MW: 36752.4 Da    PI: 4.716
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna04800.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.28.1e-131156146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                             +g+W +eEde l++ vk+ G+++W++I ++  + Rt+k+c++rw +
  mrna04800.1-v1.0-hybrid 11 KGPWKAEEDEVLLNHVKKCGPRDWSSIRSKGLLQRTGKSCRLRWVN 56
                             79*************************8887799**********87 PP
2Myb_DNA-binding39.61.3e-1267106344
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                              +++ eE+   +++ +q+G++ W++Ia ++  gRt++++k++w
  mrna04800.1-v1.0-hybrid  67 KFSLEEERVVIELQAQFGNK-WAKIATHLA-GRTDNDVKNFW 106
                              799*****************.*********.*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-20659IPR009057Homeodomain-like
PROSITE profilePS5129420.729662IPR017930Myb domain
SuperFamilySSF466893.91E-278106IPR009057Homeodomain-like
SMARTSM007175.3E-101060IPR001005SANT/Myb domain
CDDcd001673.19E-101358No hitNo description
PfamPF139212.1E-121473No hitNo description
Gene3DG3DSA:1.10.10.601.7E-1760112IPR009057Homeodomain-like
PROSITE profilePS5129417.7263114IPR017930Myb domain
SMARTSM007171.3E-1164112IPR001005SANT/Myb domain
CDDcd001671.99E-967106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MEGKRDEGIR KGPWKAEEDE VLLNHVKKCG PRDWSSIRSK GLLQRTGKSC RLRWVNKLRP  60
NLKNGCKFSL EEERVVIELQ AQFGNKWAKI ATHLAGRTDN DVKNFWSSRQ KRLARILQTS  120
TAAITPSKSH KNRREIPVYH DEVPTLEEPE YRENPKHFFF KEIPKFSCSS EGESSSQAAS  180
CSSPCIGNSD ALQMVPVPDL LDSKFLGFEA DPVQQEPALP EKNLWIESQP LIPFLENQQP  240
QTDLEFSSDQ ELLKLDFDML TTLDAELGKQ LDIGPPFLEP VGSCGNVEGE MIDDPITPDC  300
VFDDFPADMF DQIELLPNGS NPSHD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-24911225126MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna04800.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004308519.10.0PREDICTED: myb-related protein Myb4
TrEMBLA0A2P6SF290.0A0A2P6SF29_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004308519.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36933164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.14e-71MYB family protein