PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna04784.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | SBP | ||||||||
Protein Properties | Length: 226aa MW: 24409.4 Da PI: 7.9565 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 71.7 | 1.4e-22 | 168 | 215 | 1 | 48 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 +CqvegC++ l +akeyhrrhkvCe+hska++v+v gleqrfCqqCsr mrna04784.1-v1.0-hybrid 168 RCQVEGCQVALVSAKEYHRRHKVCEMHSKASKVVVLGLEQRFCQQCSR 215 6**********************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 6.5E-24 | 163 | 215 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 19.666 | 166 | 225 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 6.02E-22 | 167 | 215 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 9.5E-18 | 169 | 215 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MEMFGQTIGG RAGQNGNNAN LAWDIWEMNN GGNSNSNGNN DILYMTAATA AVTIVEPPSG 60 STASSEASLG HALMHNDGVQ AVEQHFQNFY GGDHHHHGRL HGSQYLPDPH LMCLKLGKRH 120 YFEDAAPPLL DHHHRHVAGF PLAMKRGKNL YGAGGGGGAS TSSLKVPRCQ VEGCQVALVS 180 AKEYHRRHKV CEMHSKASKV VVLGLEQRFC QQCSRSVLSE QLFSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 8e-15 | 157 | 215 | 1 | 57 | squamosa promoter binding protein-like 4 |
1wj0_A | 4e-15 | 169 | 222 | 6 | 59 | squamosa promoter-binding protein-like 12 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna04784.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004308484.1 | 1e-143 | PREDICTED: squamosa promoter-binding-like protein 7 | ||||
TrEMBL | A0A2P6SFK8 | 8e-99 | A0A2P6SFK8_ROSCH; Putative transcription factor SBP family | ||||
STRING | XP_004308484.1 | 1e-142 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9613 | 27 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27370.4 | 9e-24 | squamosa promoter binding protein-like 10 |
Link Out ? help Back to Top | |
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Phytozome | mrna04784.1-v1.0-hybrid |