PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna04774.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 813aa    MW: 88500.9 Da    PI: 5.2726
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna04774.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.63.3e-067198127
                             --S---SGGGGTS.--TTTTT-SS-SSS CS
                  zf-CCCH  1 yktelCrffartG.tCkyGdrCkFaHgp 27
                             +kt+lC+ff+r    C +G+ C++aH++
  mrna04774.1-v1.0-hybrid 71 WKTSLCSFFRRQDaSCGHGAGCRYAHSE 98
                             8**********66*************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.1E-567103IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-1167104IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.9117099IPR000571Zinc finger, CCCH-type
CDDcd005907.92E-4163206No hitNo description
Gene3DG3DSA:3.30.70.3307.8E-4169207IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5168747.899254812IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533357.49E-47256282IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533357.49E-47316450IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533357.49E-47486610IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1507.8E-65507610IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF138473.3E-9555616IPR025714Methyltransferase domain
CDDcd024402.87E-6556610No hitNo description
Gene3DG3DSA:3.40.50.1507.8E-65688752IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533357.49E-47700753IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF059589.7E-8705748IPR010280(Uracil-5)-methyltransferase family
PROSITE patternPS012300708740IPR030390RNA methyltransferase TrmA, active site
Gene3DG3DSA:3.40.50.1507.8E-65787812IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533357.49E-47796812IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006396Biological ProcessRNA processing
GO:0000166Molecular Functionnucleotide binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 813 aa     Download sequence    Send to blast
MSSPTDLPSV PAIQTPQSQI NGHDSTDHPQ PPHDAETQPP PQDDAVSGDK RKRDVEEEEG  60
GDNKTKQHPL WKTSLCSFFR RQDASCGHGA GCRYAHSEAE LRPRPDNTWD PTSERAKKAS  120
CEEEKECAAI DDVMMTEALE DDDEDGEGDG FGSDPALSKC LGIQYKSAKK KKGMALGFMS  180
FESAEQLETA VKALDGISIG NNNIKVADVL PRSFEKKTKS ALGLPLIGES GEDSMVANGV  240
EDGDGMKGRS ARTVVTPLAH MPYADQLEQK KSSVTQILKK LTRNARKACP NGVPLPEWIL  300
KSREIGDGGL PCILEGILAS PVVNGYRNKC EFSVGHSLQG KVTVGFMLGN FREGVTAVEE  360
PLDCPNVSAI SCKFASIFQE FLQQSSLPVW NRFKNNGFWR QLTVREGRSG SVSDAENCEL  420
NMSEILLMVQ VSIAGFDNSL VTSEFERLAQ AFSAGATENS PSLPLTAFVI QDHQGISNVA  480
PADAPLHSLC ISKAENGSEI QATNNMTEPK IHDYISNLRF CISPTAFFQV NTLAAEKLYS  540
LAGDWAELGP HTLLFDVCCG TGTIGLTLAH RVGMVVGIEM NASAVLDAQR NAEINGIKNC  600
RFVCSKAEDV MRSLLEEYLT VPEKQVTNAI EGSDKAIVTD EKKIVATDEE IIKDEKPNPE  660
ESSSHEPENG KTASDSIENG MHELQQSCSS EKNKSPVRCF KNIVAIVDPP RSGLHPTVIK  720
ALRTHSGLRR LVYISCNPET LVANAIELCT PSPDKIEKNK NNRAWRNMSS AGLARHRAKS  780
MPASEPFRPV KAMAVDLFPH TVHCELVMLL ER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xj1_A5e-18512617262371Uncharacterized RNA methyltransferase SP_1029
5xj2_A5e-18512617262371Uncharacterized RNA methyltransferase SP_1029
5xj2_B5e-18512617262371Uncharacterized RNA methyltransferase SP_1029
5xj2_C5e-18512617262371Uncharacterized RNA methyltransferase SP_1029
5xj2_D5e-18512617262371Uncharacterized RNA methyltransferase SP_1029
5zq0_A5e-18512617263372Uncharacterized RNA methyltransferase SP_1029
5zq1_A5e-18512617262371Uncharacterized RNA methyltransferase SP_1029
5zq8_A5e-18512617262371Uncharacterized RNA methyltransferase SP_1029
5zq8_B5e-18512617262371Uncharacterized RNA methyltransferase SP_1029
5zth_A5e-18512617263372Uncharacterized RNA methyltransferase SP_1029
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna04774.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004295024.10.0PREDICTED: zinc finger CCCH domain-containing protein 24
SwissprotQ8L7S30.0C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A2P6QHG30.0A0A2P6QHG3_ROSCH; Putative tRNA (Uracil(54)-C(5))-methyltransferase transcription factor C3H family
STRINGXP_004295024.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88541720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.10.0C3H family protein
Publications ? help Back to Top
  1. Wang Y, et al.
    Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis.
    BMC Plant Biol., 2017. 17(1): p. 261
    [PMID:29268705]