PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna04766.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 347aa    MW: 39325.4 Da    PI: 8.5152
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna04766.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.33.6e-50151431128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                              lppGfrFhP+deel+v+yL++kv++++l++ + i+e+d+yk++Pw+Lpk++  +e+ewyfFs+r++ky++g+r+nra++sgyWka 
  mrna04766.1-v1.0-hybrid  15 LPPGFRFHPSDEELIVHYLQRKVTSRPLPA-HLITEIDLYKYNPWELPKMALFGEDEWYFFSPRERKYPNGERPNRAAASGYWKAA 99 
                              79****************************.88***************77777999****************************** PP

                      NAM  87 gkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              g+dk++l++   ++ +g+kk Lvfy+grap+g+kt+W+m eyrl
  mrna04766.1-v1.0-hybrid 100 GSDKPILTTcgISKRIGVKKALVFYTGRAPTGSKTEWIMIEYRL 143
                              ********9766677***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-5911170IPR003441NAC domain
PROSITE profilePS5100558.6315170IPR003441NAC domain
PfamPF023653.3E-2616143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MEMEPVFSAS PNFQLPPGFR FHPSDEELIV HYLQRKVTSR PLPAHLITEI DLYKYNPWEL  60
PKMALFGEDE WYFFSPRERK YPNGERPNRA AASGYWKAAG SDKPILTTCG ISKRIGVKKA  120
LVFYTGRAPT GSKTEWIMIE YRLLDSSIKP SKSKGSMKLD DWVLCRVQQK GNTSKNKCNS  180
QGSSPEYWSG LQKVEQTQHT YANPNTEMIT DFLYKDCTLL ASILAGQAPP ISSVSFQRTN  240
NGYEAGPNYK VNSTISISSP GLISETLKRK STEEITKKNP FRIDNNLASK SNNEDLLPSK  300
RMEENYISSY NHSHSQNDIV KANPIDTTDY EELNEMAILG RYFSEI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-691217514170NO APICAL MERISTEM PROTEIN
1ut4_B5e-691217514170NO APICAL MERISTEM PROTEIN
1ut7_A5e-691217514170NO APICAL MERISTEM PROTEIN
1ut7_B5e-691217514170NO APICAL MERISTEM PROTEIN
3swm_A5e-691217517173NAC domain-containing protein 19
3swm_B5e-691217517173NAC domain-containing protein 19
3swm_C5e-691217517173NAC domain-containing protein 19
3swm_D5e-691217517173NAC domain-containing protein 19
3swp_A5e-691217517173NAC domain-containing protein 19
3swp_B5e-691217517173NAC domain-containing protein 19
3swp_C5e-691217517173NAC domain-containing protein 19
3swp_D5e-691217517173NAC domain-containing protein 19
4dul_A5e-691217514170NAC domain-containing protein 19
4dul_B5e-691217514170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna04766.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011461700.10.0PREDICTED: NAC domain-containing protein 2-like
SwissprotQ52QH48e-74NAC68_ORYSJ; NAC domain-containing protein 68
TrEMBLA0A314YIC51e-149A0A314YIC5_PRUYE; NAC domain-containing protein 2
STRINGXP_009338296.11e-148(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24162981
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.13e-75NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Taga Y, et al.
    Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4.
    Plant Signal Behav, 2009. 4(8): p. 740-2
    [PMID:19820348]
  3. Xia N, et al.
    Characterization of a novel wheat NAC transcription factor gene involved in defense response against stripe rust pathogen infection and abiotic stresses.
    Mol. Biol. Rep., 2010. 37(8): p. 3703-12
    [PMID:20213512]
  4. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  5. Nakayama A, et al.
    Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice.
    BMC Plant Biol., 2013. 13: p. 150
    [PMID:24093634]
  6. Ootsubo Y,Hibino T,Wakazono T,Mukai Y,Che FS
    IREN, a novel EF-hand motif-containing nuclease, functions in the degradation of nuclear DNA during the hypersensitive response cell death in rice.
    Biosci. Biotechnol. Biochem., 2016. 80(4): p. 748-60
    [PMID:26766411]