PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna04766.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NAC | ||||||||
Protein Properties | Length: 347aa MW: 39325.4 Da PI: 8.5152 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 161.3 | 3.6e-50 | 15 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGfrFhP+deel+v+yL++kv++++l++ + i+e+d+yk++Pw+Lpk++ +e+ewyfFs+r++ky++g+r+nra++sgyWka mrna04766.1-v1.0-hybrid 15 LPPGFRFHPSDEELIVHYLQRKVTSRPLPA-HLITEIDLYKYNPWELPKMALFGEDEWYFFSPRERKYPNGERPNRAAASGYWKAA 99 79****************************.88***************77777999****************************** PP NAM 87 gkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 g+dk++l++ ++ +g+kk Lvfy+grap+g+kt+W+m eyrl mrna04766.1-v1.0-hybrid 100 GSDKPILTTcgISKRIGVKKALVFYTGRAPTGSKTEWIMIEYRL 143 ********9766677***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-59 | 11 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.63 | 15 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.3E-26 | 16 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MEMEPVFSAS PNFQLPPGFR FHPSDEELIV HYLQRKVTSR PLPAHLITEI DLYKYNPWEL 60 PKMALFGEDE WYFFSPRERK YPNGERPNRA AASGYWKAAG SDKPILTTCG ISKRIGVKKA 120 LVFYTGRAPT GSKTEWIMIE YRLLDSSIKP SKSKGSMKLD DWVLCRVQQK GNTSKNKCNS 180 QGSSPEYWSG LQKVEQTQHT YANPNTEMIT DFLYKDCTLL ASILAGQAPP ISSVSFQRTN 240 NGYEAGPNYK VNSTISISSP GLISETLKRK STEEITKKNP FRIDNNLASK SNNEDLLPSK 300 RMEENYISSY NHSHSQNDIV KANPIDTTDY EELNEMAILG RYFSEI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-69 | 12 | 175 | 14 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-69 | 12 | 175 | 14 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-69 | 12 | 175 | 14 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-69 | 12 | 175 | 14 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-69 | 12 | 175 | 17 | 173 | NAC domain-containing protein 19 |
3swm_B | 5e-69 | 12 | 175 | 17 | 173 | NAC domain-containing protein 19 |
3swm_C | 5e-69 | 12 | 175 | 17 | 173 | NAC domain-containing protein 19 |
3swm_D | 5e-69 | 12 | 175 | 17 | 173 | NAC domain-containing protein 19 |
3swp_A | 5e-69 | 12 | 175 | 17 | 173 | NAC domain-containing protein 19 |
3swp_B | 5e-69 | 12 | 175 | 17 | 173 | NAC domain-containing protein 19 |
3swp_C | 5e-69 | 12 | 175 | 17 | 173 | NAC domain-containing protein 19 |
3swp_D | 5e-69 | 12 | 175 | 17 | 173 | NAC domain-containing protein 19 |
4dul_A | 5e-69 | 12 | 175 | 14 | 170 | NAC domain-containing protein 19 |
4dul_B | 5e-69 | 12 | 175 | 14 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna04766.1-v1.0-hybrid |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011461700.1 | 0.0 | PREDICTED: NAC domain-containing protein 2-like | ||||
Swissprot | Q52QH4 | 8e-74 | NAC68_ORYSJ; NAC domain-containing protein 68 | ||||
TrEMBL | A0A314YIC5 | 1e-149 | A0A314YIC5_PRUYE; NAC domain-containing protein 2 | ||||
STRING | XP_009338296.1 | 1e-148 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2416 | 29 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 3e-75 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna04766.1-v1.0-hybrid |