PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna04566.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

YABBY

Protein Properties

Length: 537aa MW: 59615.6 Da PI: 8.8945

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna04566.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	172	3.9e-53	9	168	1	165
YABBY 1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas..qllaaeshldeslkeelleelkveeenlks 84 +d+++ se++Cyv+CnfCnt+lav +P++ ++ +vtv+CGhC++l ++ + ++ q+++a ++ + ++ +l +++ + mrna04566.1-v1.0-hybrid 9 MDLVQPSEHLCYVRCNFCNTVLAVGLPFKRMMDTVTVKCGHCSNLSFLTTRPNNpiQIQPAPHQCQ---INDYPTTLTLHQSYSTD 91 578899************************************9888887766446777776633...33444555555554444 PP YABBY 85 nvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPk 165 +s+s+s ++ + e+ ++p++p v +PPek+ rvPsaynrf+keeiqrika+nP+i hreafsaaaknWa +P mrna04566.1-v1.0-hybrid 92 SRRGGHSSSSSSPT----SLESPSSPKAPFVCKPPEKKHRVPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYPS 168 44444444444444....345677899999***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.7E-55	14	168	IPR006780	YABBY protein
SuperFamily	SSF47095	1.31E-8	109	167	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	4.1E-5	120	169	IPR009071	High mobility group box domain
CDD	cd01390	2.61E-5	127	163	No hit	No description
Pfam	PF08449	2.2E-83	209	497	IPR013657	UAA transporter
SuperFamily	SSF103481	6.41E-5	397	498	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0055085	Biological Process	transmembrane transport

Sequence ? help Back to Top
Protein Sequence Length: 537 aa Download sequence Send to blast
MNLEDKVPMD LVQPSEHLCY VRCNFCNTVL AVGLPFKRMM DTVTVKCGHC SNLSFLTTRP 60 NNPIQIQPAP HQCQINDYPT TLTLHQSYST DSRRGGHSSS SSSPTSLESP SSPKAPFVCK 120 PPEKKHRVPS AYNRFMKEEI QRIKAANPEI PHREAFSAAA KNWARYPSSS GEAAATASGS 180 SKKLKEMKNE DQTRFLFWIS LSDRPVWQQF LICSSGFFFG YLVNGICEEY VYNRLQFSYG 240 WYFTFVQGFV YLGFIYLQGF TTKKMVNPWR TYVKLSAVLM GSHGLTKGSL AWLNYPAQIM 300 FKSTKVLPVM VMGAFIPGLR RKYPIHEYIS AILLVIGLII FTLGDANTSP NFSILGVVMI 360 SGALIMDAFM GNVQEAIFTL NPDTTQTEML FCSTVVGLPM LLPPMILTGE LFKAWNSCAE 420 HPYVYGVLVF EAMATYVGQV SVLSLIALFG AATTAMITTA RKAVTLLLSY MIFTKPLTEQ 480 HGTGLMLIAA GIMLKMVPEN QFAKHAKSIK DAVLMMSPKA NEIGLEVDEE VNKPLV*

Sequence ? help Back to Top

Protein Sequence Length: 537 aa Download sequence Send to blast

MNLEDKVPMD LVQPSEHLCY VRCNFCNTVL AVGLPFKRMM DTVTVKCGHC SNLSFLTTRP  60
NNPIQIQPAP HQCQINDYPT TLTLHQSYST DSRRGGHSSS SSSPTSLESP SSPKAPFVCK  120
PPEKKHRVPS AYNRFMKEEI QRIKAANPEI PHREAFSAAA KNWARYPSSS GEAAATASGS  180
SKKLKEMKNE DQTRFLFWIS LSDRPVWQQF LICSSGFFFG YLVNGICEEY VYNRLQFSYG  240
WYFTFVQGFV YLGFIYLQGF TTKKMVNPWR TYVKLSAVLM GSHGLTKGSL AWLNYPAQIM  300
FKSTKVLPVM VMGAFIPGLR RKYPIHEYIS AILLVIGLII FTLGDANTSP NFSILGVVMI  360
SGALIMDAFM GNVQEAIFTL NPDTTQTEML FCSTVVGLPM LLPPMILTGE LFKAWNSCAE  420
HPYVYGVLVF EAMATYVGQV SVLSLIALFG AATTAMITTA RKAVTLLLSY MIFTKPLTEQ  480
HGTGLMLIAA GIMLKMVPEN QFAKHAKSIK DAVLMMSPKA NEIGLEVDEE VNKPLV*

Functional Description ? help Back to Top
Source	Description
UniProt	Sugar transporter involved in the transport of UDP-galactose form the cytoplasm into the Golgi apparatus. {ECO:0000269\|PubMed:15891899}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna04566.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004298355.1	0.0	PREDICTED: UDP-galactose/UDP-glucose transporter 2-like
Swissprot	Q29Q28	0.0	UTR2_ARATH; UDP-galactose/UDP-glucose transporter 2
TrEMBL	A0A2P6R2F0	0.0	A0A2P6R2F0_ROSCH; Putative UAA transporter
STRING	XP_004298355.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10259	30	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69180.1	2e-53	YABBY family protein

Link Out ? help Back to Top
Phytozome	mrna04566.1-v1.0-hybrid

Publications ? help Back to Top
Norambuena L, et al. Transport of UDP-galactose in plants. Identification and functional characterization of AtUTr1, an Arabidopsis thaliana UDP-galactos/UDP-glucose transporter. J. Biol. Chem., 2002. 277(36): p. 32923-9 [PMID:12042319] Bakker H, et al. Molecular cloning of two Arabidopsis UDP-galactose transporters by complementation of a deficient Chinese hamster ovary cell line. Glycobiology, 2005. 15(2): p. 193-201 [PMID:15456736] Norambuena L, et al. AtUTr2 is an Arabidopsis thaliana nucleotide sugar transporter located in the Golgi apparatus capable of transporting UDP-galactose. Planta, 2005. 222(3): p. 521-9 [PMID:15891899] Rautengarten C, et al. The Golgi localized bifunctional UDP-rhamnose/UDP-galactose transporter family of Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2014. 111(31): p. 11563-8 [PMID:25053812]