PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna04534.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 369aa    MW: 40204.6 Da    PI: 6.2722
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna04534.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.61.4e-1563112255
                              HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              r +h+  E+rRR++iN++f+ Lr+l+P++     +K + a+ L +++eY+++Lq
  mrna04534.1-v1.0-hybrid  63 RSKHSVTEQRRRSKINERFQILRDLIPHS----EQKRDTASFLLEVIEYVQYLQ 112
                              899*************************8....79******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.11E-1859133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-2160133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.96161111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-1363112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.66E-1463115No hitNo description
SMARTSM003531.0E-1067117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MRSAGKGSQD EDEYEDDDFG SKKDGPSSNS SNPNSKAIAI VLCIGFMIGE ADAKSNDKAS  60
AIRSKHSVTE QRRRSKINER FQILRDLIPH SEQKRDTASF LLEVIEYVQY LQERVNKHEG  120
SCQGWSAEPT KLMPWRNSHW RVQSFAGHPQ PIKNDIGVIS PFPGKFDENN ISINSTQNPV  180
ESEPSRDVAS KIMDQQTEIV NKGLPPPMHL PENLLPAVRS DGMLAHPLHG PISDAQSTQC  240
PTTSGDALNQ QEHLTIEGGT ISISSVYSQG WFVVVQVIAK LSGLQLVPCL ASDSFGHYAQ  300
CNTAGVDLSQ ASVSVQIDLG NRTNRGLSAG TPASKDHENP HSSNQTMAHF RDAGSGDDSD  360
QAHKRLKS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna04534.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4288392e-38AJ428839.1 Rubus idaeus subsp. idaeus microsatellite DNA, clone 26a.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004297195.10.0PREDICTED: transcription factor BIM2
TrEMBLA0A2P6R2970.0A0A2P6R297_ROSCH; Putative transcription factor bHLH family
STRINGXP_004297195.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17303382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.12e-96BES1-interacting Myc-like protein 2