PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna04513.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 574aa    MW: 61625.8 Da    PI: 5.0773
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna04513.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.27.2e-09366414355
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  mrna04513.1-v1.0-hybrid 366 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 414
                              58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.41E-11361418No hitNo description
SuperFamilySSF474599.16E-17361431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485363413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16364430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-6366414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10369419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MDMSEKEKFE LENRNEDPMS YSPSMSYGFG GSNLTNVSMG LVPSGNSLGD SKGDLIGSSS  60
QPSASMVESF SQVLWDHPTS SQNLGFCDIN GQTSASTSNT MGIRKGIPAS LRSGIDRPLD  120
MCWNPPNSML KGGIFLPNGP AGMLPQSLSQ FPADSGFIER AARFSCFNGG NFNDMMNPFV  180
VPESMSLYSK GGGMMQWAQE VVAGQGPKAM SSNELNQVGD TSNEVSVPID HGATDGSPLK  240
NEKKSESLVK SHDEVKNAVD GSGNESDEAD FSGGAEEPSM MEGAGVGPSK SSKKRKRNGQ  300
ANELDQTKTA AQQPGESTKD DTEMVHKGAS TTNKISGKLV KQGSQTSDPP KEDYIHVRAR  360
RGQATNSHSL AERVRREKIS ERMKFLQDLV PGCSKVTGKA VMLDEIINYV QSLQRQVEFL  420
SMKLATVNPR LDLNIESLLE KDMLQSRVGP SSSMGFSPDM HIAYPPLHPS QSGLIQAGLP  480
GMGSTSDLLR RAMGSQMAPM TGGFKDPSQV PNVWEDELQN VFQMTYGTGT PSNSQDVDGS  540
NSCGHMTPLA WRILRNVAEA VDMLNNASYA AER*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna04513.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004297184.20.0PREDICTED: transcription factor bHLH49
TrEMBLA0A2P6R2690.0A0A2P6R269_ROSCH; Putative transcription factor bHLH family
STRINGXP_004297184.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72493248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-134bHLH family protein