PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna04441.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Dof

Protein Properties

Length: 512aa MW: 55369.2 Da PI: 4.9541

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna04441.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.5	1.6e-39	150	209	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+++cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk++ mrna04441.1-v1.0-hybrid 150 PDKIIPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNT 209 7899******************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-30	147	207	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.9E-32	152	208	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.817	154	208	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	156	192	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence Send to blast
MSEARDPAIK LFGKTIPLPE APPSLSDSAA AVVEKVAAPD LGDRVASSSN SSSPGGEEVN 60 DGRDGGEEKE EVNNGGDDEE SLGEKAVQNK EEDEVLPFCS EELTNPDEAS RVGESPKAPV 120 DKETAALKTL KAEEEQSETS NSQEKTLKKP DKIIPCPRCN SMDTKFCYYN NYNVNQPRHF 180 CKNCQRYWTA GGTMRNVPVG AGRRKNKNTP SQYRHITVSE ALPNGRPDVL NGVHHPSLQS 240 NGTVLTFCAD TPLCESMTSV LQLADKNVQN CTPNGFHKPE GLIIPAYGGG NGDDHSNRST 300 VTDSNSKEET SKPGPQEPVM QNYPGYPPQI PCFPGAPWPY LWNPAQWSSP VSPPAFCPPG 360 YPMPFYPAAA YWGCAVQGTW NMPWVPQPSS PNQTAPSSGS NSPTLGKHSR DENPVKQTSS 420 EEEETPKEKN AERCLWIPKT LRIDDPGEAA RSSIWATLGI KNDKADSISS GGLFKAFRSK 480 GDEKNHIAEA SPVLQANPAA LSRSLKFQES S*

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence Send to blast

MSEARDPAIK LFGKTIPLPE APPSLSDSAA AVVEKVAAPD LGDRVASSSN SSSPGGEEVN  60
DGRDGGEEKE EVNNGGDDEE SLGEKAVQNK EEDEVLPFCS EELTNPDEAS RVGESPKAPV  120
DKETAALKTL KAEEEQSETS NSQEKTLKKP DKIIPCPRCN SMDTKFCYYN NYNVNQPRHF  180
CKNCQRYWTA GGTMRNVPVG AGRRKNKNTP SQYRHITVSE ALPNGRPDVL NGVHHPSLQS  240
NGTVLTFCAD TPLCESMTSV LQLADKNVQN CTPNGFHKPE GLIIPAYGGG NGDDHSNRST  300
VTDSNSKEET SKPGPQEPVM QNYPGYPPQI PCFPGAPWPY LWNPAQWSSP VSPPAFCPPG  360
YPMPFYPAAA YWGCAVQGTW NMPWVPQPSS PNQTAPSSGS NSPTLGKHSR DENPVKQTSS  420
EEEETPKEKN AERCLWIPKT LRIDDPGEAA RSSIWATLGI KNDKADSISS GGLFKAFRSK  480
GDEKNHIAEA SPVLQANPAA LSRSLKFQES S*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna04441.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004304291.1	0.0	PREDICTED: cyclic dof factor 2
TrEMBL	A0A2P6S4E3	0.0	A0A2P6S4E3_ROSCH; Putative transcription factor C2C2-Dof family
STRING	XP_004304291.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-106	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	mrna04441.1-v1.0-hybrid