PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna04424.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 338aa    MW: 38428.1 Da    PI: 7.1489
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna04424.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1821.4e-56161421129
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                              lppGfrFhPtdeel+++yL +kv ++ +++ ++i evd++k+ePwdLp ++k +ekewyfF+ rd+ky+tg r+nrat++gyWkat
  mrna04424.1-v1.0-hybrid  16 LPPGFRFHPTDEELISHYLSPKVLDSVFTA-RAIGEVDLNKCEPWDLPWRAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKAT 100
                              79*************************999.89***************888999******************************** PP

                      NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                              gkdke+++  + lvg+kktLvfykgrapkgekt+Wvmheyrle
  mrna04424.1-v1.0-hybrid 101 GKDKEIYK-AKVLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 142
                              *******9.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.94E-6412166IPR003441NAC domain
PROSITE profilePS5100559.78316166IPR003441NAC domain
PfamPF023654.4E-3017141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MENVSVFINE DEQMELPPGF RFHPTDEELI SHYLSPKVLD SVFTARAIGE VDLNKCEPWD  60
LPWRAKMGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT GKDKEIYKAK VLVGMKKTLV  120
FYKGRAPKGE KTNWVMHEYR LEGKYSAYNL PKTAKNEWVI CRIFQKCSGG KKTHISGLVR  180
ESPYGNDQFR PSLLPPLMDS PSYNNSDTRT TTVGCETSHV SCFSDPMEDQ KAQDDIIDSF  240
NNNNNMSSTS NNHLLASSSS FPFKSSVQNS HFSNQIPPNT GNMQYPDSGF MQDQSIMRLL  300
TEPQAPSLKR NSSNYLGGQD VPSYSAAPMD FDSIWNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-541317214171NO APICAL MERISTEM PROTEIN
1ut4_B7e-541317214171NO APICAL MERISTEM PROTEIN
1ut7_A7e-541317214171NO APICAL MERISTEM PROTEIN
1ut7_B7e-541317214171NO APICAL MERISTEM PROTEIN
4dul_A7e-541317214171NAC domain-containing protein 19
4dul_B7e-541317214171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna04424.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ0017740.0JQ001774.1 Rosa hybrid cultivar NAC domain protein 100 (NAC100) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304286.10.0PREDICTED: NAC domain-containing protein 100
SwissprotQ9FLJ21e-120NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A2P6S4B40.0A0A2P6S4B4_ROSCH; Putative transcription factor NAM family
TrEMBLU5I0250.0U5I025_ROSHC; NAC domain protein 100
STRINGXP_004304286.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-114NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]