PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna04423.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB
Protein Properties Length: 394aa    MW: 43127 Da    PI: 6.7564
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna04423.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.4e-173683148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT+eEd++l+ +++++G g+W++ + + g+ R++k+c++rw +yl
  mrna04423.1-v1.0-hybrid 36 KGPWTPEEDQKLLAYIEEHGHGSWRALPIKAGLQRCGKSCRLRWTNYL 83
                             79********************************************97 PP
2Myb_DNA-binding52.88.9e-1789134148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l
  mrna04423.1-v1.0-hybrid  89 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 134
                              89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-252786IPR009057Homeodomain-like
PROSITE profilePS5129417.743183IPR017930Myb domain
SuperFamilySSF466892.21E-3033130IPR009057Homeodomain-like
SMARTSM007178.2E-143585IPR001005SANT/Myb domain
PfamPF002493.8E-163683IPR001005SANT/Myb domain
CDDcd001671.87E-113883No hitNo description
PROSITE profilePS5129425.89184138IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.0E-2687138IPR009057Homeodomain-like
SMARTSM007171.2E-1688136IPR001005SANT/Myb domain
PfamPF002494.7E-1689134IPR001005SANT/Myb domain
CDDcd001677.59E-1291134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000902Biological Processcell morphogenesis
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MRSEALVQRL PCRLTTSLAV VEMGRSPCCD KVGLKKGPWT PEEDQKLLAY IEEHGHGSWR  60
ALPIKAGLQR CGKSCRLRWT NYLRPDIKRG KFSLQEEQTI IQLHALLGNR WSAIATHLPK  120
RTDNEIKNYW NTHLKKRLAK MGIDPVTHKP KNDALLSAHD GQSKNAANLS HMAQWESARL  180
EAEARLVRES KLRSHNSLIN QLAAAAAAST SSSSAHQLLL MKGQSLDSPT STLTTYNSEN  240
VAQGIMPSSS MIEFVGCSGA SSGDHHDQTA AINAKEEGDV QVQDWKLGFG NMPSSSTHFG  300
LHDNVAWTSS NEQVHHDRGI GGVDEIADQE GFTNLLLNNS VDRDQSMSDG GAGCDSENGG  360
SAGSDYYEDN KNYWNSILNL VNSSPSHDDS PIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26341385108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269|PubMed:17376813, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna04423.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFR8285410.0FR828541.1 Rosa rugosa mRNA for putative MYB transcription factor (myb8 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304285.10.0PREDICTED: protein ODORANT1
SwissprotQ9LXF11e-121MYB16_ARATH; Transcription factor MYB16
TrEMBLA0A2P6S4C80.0A0A2P6S4C8_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004304285.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83534127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.11e-122myb domain protein 16
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]
  4. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]