PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna04400.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 419aa    MW: 46209.8 Da    PI: 4.292
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna04400.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.9e-194796255
                      AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  mrna04400.1-v1.0-hybrid 47 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 96
                             789******.7*********33....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.64E-3146103No hitNo description
PROSITE profilePS5103219.55947104IPR001471AP2/ERF domain
SMARTSM003807.1E-3547111IPR001471AP2/ERF domain
PfamPF008471.0E-134796IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-1947104IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-2747103IPR001471AP2/ERF domain
PRINTSPR003676.2E-84859IPR001471AP2/ERF domain
PRINTSPR003676.2E-87086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MARKRKVSEG VEETKSCSEG TMAWDEMVKE ASAAAALGGA ARRARKRFVG VRQRPSGRWV  60
AEIKDTIQKI RVWLGTFDTA EEAARAYDEA ACLLRGANTR TNFWPCSPSP SSTPALPSKI  120
TNLLLQRLKA RNNNTSCTAA PLPVNHQQKQ YQEEAAAEFS ENQYTDFLND PEDYITSNNE  180
YIPEISASSI DYMTSSFESC LTEKEEYSIA READQQMDYG NLSEVAGTTY SGGDANFVCA  240
GSEEDVEEEE VNGQVGAIDF QFVDDIGSTD YYSPSPFEIA EEIEEAVEPE TYADEPSMLR  300
AAMKRMKYER KFSASLYAFN GIPECLKLKI ESSTTGNTRM RGISDLQRAC SNKNKEEAAA  360
KQEYEGKKEE ENQQTSTDMG SSSSSSSFSS MSSAVNGDGE LSLWNSLDLQ PICFLSTN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna04400.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306123.10.0PREDICTED: uncharacterized protein LOC101315370
TrEMBLA0A3S8T9320.0A0A3S8T932_FRAAN; Transcription factor ERF42
STRINGXP_004306123.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33383267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.15e-16related to AP2 11