PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna04391.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 520aa    MW: 56652.9 Da    PI: 8.6241
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna04391.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.13.2e-32234290259
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              dD ynWrKYGqK+vkgse+prsYY+Ct+ +Cpvkkkvers   ++++ei+Y+g+Hnhe
  mrna04391.1-v1.0-hybrid 234 DDRYNWRKYGQKQVKGSEYPRSYYKCTHLNCPVKKKVERSP-TGEITEIIYKGQHNHE 290
                              8****************************************.9**************8 PP
2WRKY106.41.5e-33405463159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+a+dpk+v++tYeg+Hnh+
  mrna04391.1-v1.0-hybrid 405 LDDGYRWRKYGQKVVKGNPHPRSYYKCTYTGCNVRKHVERAANDPKAVITTYEGKHNHD 463
                              59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.4E-28223292IPR003657WRKY domain
PROSITE profilePS5081123.342228292IPR003657WRKY domain
SuperFamilySSF1182903.79E-25229292IPR003657WRKY domain
SMARTSM007743.2E-35233291IPR003657WRKY domain
PfamPF031061.9E-24234290IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.5E-37390465IPR003657WRKY domain
SuperFamilySSF1182904.71E-30397465IPR003657WRKY domain
PROSITE profilePS5081137.987400465IPR003657WRKY domain
SMARTSM007749.0E-40405464IPR003657WRKY domain
PfamPF031061.7E-26406463IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MAAKHQDSIS ARQPQRPVIS LPPRPSAEAL FGGGSGASPG PMTLVSSFFS DSGYDSDFRS  60
FSQLLAGAMG SPLAQVRPVM FGQNQNPVRN EGGGSEYGGE KSSGFKQSRP MNLMVTHSPL  120
FTVPPGLSPS GLLNSPAGFF APPSPFGISH QQALAHVTAL AQSNLQMQAE YQSSLLAAPI  180
ESQPSNASSI PNEASQQQTA PSTSELGSSM VQTSEASRSD RKYPSSHATD KPADDRYNWR  240
KYGQKQVKGS EYPRSYYKCT HLNCPVKKKV ERSPTGEITE IIYKGQHNHE PPQPNKRVKD  300
GGGQNGHMDS QPKLENGLQR RVGDSNKSCE AVPERDYEHT QAAPVQLPSD SEDLGDAETR  360
EEGDVDEPNP KRRNIDGVAS EVALPHKTVT EPKIIVQTRS EVDLLDDGYR WRKYGQKVVK  420
GNPHPRSYYK CTYTGCNVRK HVERAANDPK AVITTYEGKH NHDVPAARNS SHNIANNASQ  480
FKAPTVVAAE KHPLLKGREF GNNDQRPVVL QLKEEQIAV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-39234466878Probable WRKY transcription factor 4
2lex_A2e-39234466878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna04391.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304267.10.0PREDICTED: probable WRKY transcription factor 3
SwissprotQ9ZQ701e-147WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A2P6S4790.0A0A2P6S479_ROSCH; Putative transcription factor WRKY family
STRINGXP_004304267.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-134WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]