PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna04303.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 1991aa    MW: 222104 Da    PI: 6.5109
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna04303.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM768.8e-2471283128
                      NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                              pG+rF+P+dee+v  yL +k+ g+ ++  +v+++ d+y++ P++Lp    + +  ++ewyf+++r  ++     + r t++g+  a
  mrna04303.1-v1.0-hybrid   7 PGLRFQPSDEEIVRVYLIPKILGRLNPY-DVVTTEDVYSTSPEQLPLgndAGHFIDNEWYFYTTRPISS-----HYR-TRNGFYFA 85 
                              9************************999.99***************42432223678******998754.....345.688***** PP

                      NAM  86 tgkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128
                              t  ++++l+ ++++vg ++ L fy g r ++g +t+W++he+r+
  mrna04303.1-v1.0-hybrid  86 TSMNEPILH-NNNVVGFRRFLRFYLGsRPETGIETEWTVHEFRA 128
                              *********.999***********885777899*********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100529.8415158IPR003441NAC domain
SuperFamilySSF1019411.44E-266155IPR003441NAC domain
PfamPF023657.4E-137127IPR003441NAC domain
Gene3DG3DSA:1.25.10.108.1E-16829879IPR011989Armadillo-like helical
SuperFamilySSF483715.76E-25852892IPR016024Armadillo-type fold
Gene3DG3DSA:3.30.40.106.6E-9893955IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579033.84E-8902958IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500168.823903953IPR019787Zinc finger, PHD-finger
SMARTSM002496.9E-4905951IPR001965Zinc finger, PHD-type
CDDcd154898.26E-6905950No hitNo description
PROSITE patternPS013590906950IPR019786Zinc finger, PHD-type, conserved site
SuperFamilySSF483715.76E-259851026IPR016024Armadillo-type fold
SuperFamilySSF483715.76E-2510771237IPR016024Armadillo-type fold
Gene3DG3DSA:1.25.10.108.1E-1610811225IPR011989Armadillo-like helical
PfamPF127658.6E-1211041145IPR026003HEAT repeat associated with sister chromatid cohesion protein
Gene3DG3DSA:1.25.10.108.1E-1613431484IPR011989Armadillo-like helical
SuperFamilySSF483715.76E-2513521456IPR016024Armadillo-type fold
SuperFamilySSF483715.76E-2514931515IPR016024Armadillo-type fold
PfamPF128301.5E-4315431733IPR024986Sister chromatid cohesion C-terminal domain
SuperFamilySSF483715.76E-2515501603IPR016024Armadillo-type fold
Gene3DG3DSA:1.25.10.108.1E-1615591579IPR011989Armadillo-like helical
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0034508Biological Processcentromere complex assembly
GO:0051177Biological Processmeiotic sister chromatid cohesion
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 1991 aa     Download sequence    Send to blast
MAAPPVPGLR FQPSDEEIVR VYLIPKILGR LNPYDVVTTE DVYSTSPEQL PLGNDAGHFI  60
DNEWYFYTTR PISSHYRTRN GFYFATSMNE PILHNNNVVG FRRFLRFYLG SRPETGIETE  120
WTVHEFRANP AVFPAANLLG SVVQEKLSSM VMCKIVRIQE LSDNSSEEGV KDESGSSRIN  180
LLQNTRLNLQ SSLQAHPSSV AKKAGSHLSV EGISLIYHPC HSASTSSLHA LAPPSPVNQP  240
MSYPVTSSSG SGAGHQGIRL SNTTHSEVAP CLPLPSLPVF CGASDQDLRL FDEPSWSGAR  300
LNYYDAAQAS RIADLLRATD VSYLNLREDT AEVQYGYVQP MELLDEVLQY NREAFQYNTP  360
GPIKVQVPAS STVPDKKPAV PIIPIIRTSE RDYGATHNNQ LSHTPSNDIS IPSSRKPKAK  420
RKASDGNTSS VESDPVASQE ATIGCFCELV EDFCGRAEVF SEDREESEWI SMPLSNLRML  480
ANEITSLRAK RLLHKVPVDT FVRLLRILDH QIHGAEGLSI NEQSDSNVVS SINCALESIH  540
AALAVMANNQ MPKQLYKEEI IERILEFSRH QIMDVMCACD PSYRALHRPS ENGTVEVEED  600
DILDAEFGSA SKRRRSIKTV KVQKSSFNRC AHLVSAAVNN ILQKLCTILG LLKDLLLIEK  660
LSDSCILQLL KTSFTTFMVD NIQLLQLKAI GLISGIYYSY TQHRIYVIDE LLQLLWKLPF  720
SKRALRAYHL PDEEQTQIQM ITALLIQLVH CSANLPAPLR QESSVNSILE VSDNADYPIK  780
GLEAAQAACC HFWKGVLQRF ANVKNQEASE FKVMMENLVT DLLTTLNLPE YPASAPILEV  840
LCVLLLANAG VKSKDVAARS MAIDLLGTIA ARLKRDSVLR SRGKFWILQE LISGDAADQT  900
YPKDVCSSCL DDKAEKTFFV CQGCQRMFHA DCMGVREHEV NNQTWHCQIC LCRKQLLVLQ  960
SYCKSQYKDD VSMDNKGSGR QTEVTFSITK PEIVQQLLLN YLQDAASADD VHLFVRWLYV  1020
CLWYKDDPPK SQQKFLYYLA RLNSKAIVRD SGTVFSLLTR DLIKQITLVL GRNTSFARGF  1080
DKILHLLLAS LRENSPVIRA KALRAVSIVV EADPEVLGDK RVQPAVEGRF CDSAISVREA  1140
ALELVGRHIA SHPDVGLKYF EKVAERIKDT GVSVRKRSIK IIRDMCVSNK DFSEFTSACI  1200
AIISRIGDDE SSIQDLVCKT FYEFWFEENT GSHTQFFGDD SSVPLEVAKK VEQIVEMLRR  1260
IPTPHHLVTV IKRNLALDFF PQAAKAAGIN PVLLASVRNR CELMCKFLLE RILQVEELNI  1320
QEVEMRALPY VQVLHAFCVV DPMLLAPVSN PSQFVVTLQP YLKSQDDNRV VAKLLESIIF  1380
IIDAVLPLVR KLPQNVLEEL EQDLKSMIVR HSFLTVVHAC IKCLCAVSKV AGKGATVVEY  1440
LIQVFYKRLD AEEVDNQQAL GFVLIARPEF MLEKDIGKIL EDTFSSGSDV RLKMQTLQNM  1500
YDYLLDAESQ LGTDTTSNSV ADCSVEGGNA VPVAAGAGDT NICGGIVQLY WDNILERCLD  1560
FNEQIRNSAL KIVEVVLRQG LVHPITCVPF LIALETDPLE ANSTLAHHLL MNMNENRLGD  1620
GLQMSFGFIQ SIRPGTEREN TIPPLKASGN AKGKVDDVSF AQARLGVSRI YKLIRGNRVS  1680
RNKFMSSIVR KFDNPSWTTS VVPFLMYCTE ILALLPFTTP DEPLYLVYAI NRVIQVKAGQ  1740
LEAKLKALTL HLLQRGAPRG NGVIKEDHAA PPFIRGMALV DLNGTIEPET AFRPAPNYMA  1800
AMDLNGAIEQ DPADEYVSNQ DTMLEAKIGK SSESSSGISI DDVQIIQADC LAAIALQLLL  1860
KLKRHLKIVY SLNDARCQAF SPTDPIKPGD AFTKQSIPFD VSDTHTNLPG TYQELVQRYQ  1920
DFKNALKEDT VDFSTYTANV KRKRPAPRKG RKSGVRDDDV DNDDDDDWSG GARRLSYSGR  1980
RGGQTRSRQR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5t8v_A6e-32496122678757Putative uncharacterized protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein required for cell fate determination during embryogenesis (PubMed:19228337, PubMed:15266054, PubMed:28137757). Involved in sister chromatid cohesion during meiosis and mitosis (PubMed:19228337, PubMed:19533160). Forms a complex with SCC4, which is required for the association of the cohesin complex with chromosomes (PubMed:28137757). Plays a structural role in chromatin, especially in centromere organization, chromosomal axis formation, and distribution of the cohesin subunit SCC3 on chromosomes (PubMed:19228337). {ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:19228337, ECO:0000269|PubMed:19533160, ECO:0000269|PubMed:28137757}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna04303.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011467895.10.0PREDICTED: nipped-B-like protein A
SwissprotA5HEI10.0SCC2_ARATH; Sister chromatid cohesion protein SCC2
TrEMBLA0A2P6S4060.0A0A2P6S406_ROSCH; Sister chromatid cohesion protein
STRINGXP_004306090.10.0(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.16e-21NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Jones S,Sgouros J
    The cohesin complex: sequence homologies, interaction networks and shared motifs.
    Genome Biol., 2001. 2(3): p. RESEARCH0009
    [PMID:11276426]
  2. Sebastian J, et al.
    The plant adherin AtSCC2 is required for embryogenesis and sister-chromatid cohesion during meiosis in Arabidopsis.
    Plant J., 2009. 59(1): p. 1-13
    [PMID:19228337]
  3. Schubert V, et al.
    Cohesin gene defects may impair sister chromatid alignment and genome stability in Arabidopsis thaliana.
    Chromosoma, 2009. 118(5): p. 591-605
    [PMID:19533160]
  4. Minina EA, et al.
    The Arabidopsis homolog of Scc4/MAU2 is essential for embryogenesis.
    J. Cell. Sci., 2017. 130(6): p. 1051-1063
    [PMID:28137757]