PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna04303.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NAC | ||||||||
Protein Properties | Length: 1991aa MW: 222104 Da PI: 6.5109 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 76 | 8.8e-24 | 7 | 128 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 pG+rF+P+dee+v yL +k+ g+ ++ +v+++ d+y++ P++Lp + + ++ewyf+++r ++ + r t++g+ a mrna04303.1-v1.0-hybrid 7 PGLRFQPSDEEIVRVYLIPKILGRLNPY-DVVTTEDVYSTSPEQLPLgndAGHFIDNEWYFYTTRPISS-----HYR-TRNGFYFA 85 9************************999.99***************42432223678******998754.....345.688***** PP NAM 86 tgkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128 t ++++l+ ++++vg ++ L fy g r ++g +t+W++he+r+ mrna04303.1-v1.0-hybrid 86 TSMNEPILH-NNNVVGFRRFLRFYLGsRPETGIETEWTVHEFRA 128 *********.999***********885777899*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 29.841 | 5 | 158 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.44E-26 | 6 | 155 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.4E-13 | 7 | 127 | IPR003441 | NAC domain |
Gene3D | G3DSA:1.25.10.10 | 8.1E-16 | 829 | 879 | IPR011989 | Armadillo-like helical |
SuperFamily | SSF48371 | 5.76E-25 | 852 | 892 | IPR016024 | Armadillo-type fold |
Gene3D | G3DSA:3.30.40.10 | 6.6E-9 | 893 | 955 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57903 | 3.84E-8 | 902 | 958 | IPR011011 | Zinc finger, FYVE/PHD-type |
PROSITE profile | PS50016 | 8.823 | 903 | 953 | IPR019787 | Zinc finger, PHD-finger |
SMART | SM00249 | 6.9E-4 | 905 | 951 | IPR001965 | Zinc finger, PHD-type |
CDD | cd15489 | 8.26E-6 | 905 | 950 | No hit | No description |
PROSITE pattern | PS01359 | 0 | 906 | 950 | IPR019786 | Zinc finger, PHD-type, conserved site |
SuperFamily | SSF48371 | 5.76E-25 | 985 | 1026 | IPR016024 | Armadillo-type fold |
SuperFamily | SSF48371 | 5.76E-25 | 1077 | 1237 | IPR016024 | Armadillo-type fold |
Gene3D | G3DSA:1.25.10.10 | 8.1E-16 | 1081 | 1225 | IPR011989 | Armadillo-like helical |
Pfam | PF12765 | 8.6E-12 | 1104 | 1145 | IPR026003 | HEAT repeat associated with sister chromatid cohesion protein |
Gene3D | G3DSA:1.25.10.10 | 8.1E-16 | 1343 | 1484 | IPR011989 | Armadillo-like helical |
SuperFamily | SSF48371 | 5.76E-25 | 1352 | 1456 | IPR016024 | Armadillo-type fold |
SuperFamily | SSF48371 | 5.76E-25 | 1493 | 1515 | IPR016024 | Armadillo-type fold |
Pfam | PF12830 | 1.5E-43 | 1543 | 1733 | IPR024986 | Sister chromatid cohesion C-terminal domain |
SuperFamily | SSF48371 | 5.76E-25 | 1550 | 1603 | IPR016024 | Armadillo-type fold |
Gene3D | G3DSA:1.25.10.10 | 8.1E-16 | 1559 | 1579 | IPR011989 | Armadillo-like helical |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0034508 | Biological Process | centromere complex assembly | ||||
GO:0051177 | Biological Process | meiotic sister chromatid cohesion | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root | ||||
PO:0007134 | developmental stage | sporophyte vegetative stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 1991 aa Download sequence Send to blast |
MAAPPVPGLR FQPSDEEIVR VYLIPKILGR LNPYDVVTTE DVYSTSPEQL PLGNDAGHFI 60 DNEWYFYTTR PISSHYRTRN GFYFATSMNE PILHNNNVVG FRRFLRFYLG SRPETGIETE 120 WTVHEFRANP AVFPAANLLG SVVQEKLSSM VMCKIVRIQE LSDNSSEEGV KDESGSSRIN 180 LLQNTRLNLQ SSLQAHPSSV AKKAGSHLSV EGISLIYHPC HSASTSSLHA LAPPSPVNQP 240 MSYPVTSSSG SGAGHQGIRL SNTTHSEVAP CLPLPSLPVF CGASDQDLRL FDEPSWSGAR 300 LNYYDAAQAS RIADLLRATD VSYLNLREDT AEVQYGYVQP MELLDEVLQY NREAFQYNTP 360 GPIKVQVPAS STVPDKKPAV PIIPIIRTSE RDYGATHNNQ LSHTPSNDIS IPSSRKPKAK 420 RKASDGNTSS VESDPVASQE ATIGCFCELV EDFCGRAEVF SEDREESEWI SMPLSNLRML 480 ANEITSLRAK RLLHKVPVDT FVRLLRILDH QIHGAEGLSI NEQSDSNVVS SINCALESIH 540 AALAVMANNQ MPKQLYKEEI IERILEFSRH QIMDVMCACD PSYRALHRPS ENGTVEVEED 600 DILDAEFGSA SKRRRSIKTV KVQKSSFNRC AHLVSAAVNN ILQKLCTILG LLKDLLLIEK 660 LSDSCILQLL KTSFTTFMVD NIQLLQLKAI GLISGIYYSY TQHRIYVIDE LLQLLWKLPF 720 SKRALRAYHL PDEEQTQIQM ITALLIQLVH CSANLPAPLR QESSVNSILE VSDNADYPIK 780 GLEAAQAACC HFWKGVLQRF ANVKNQEASE FKVMMENLVT DLLTTLNLPE YPASAPILEV 840 LCVLLLANAG VKSKDVAARS MAIDLLGTIA ARLKRDSVLR SRGKFWILQE LISGDAADQT 900 YPKDVCSSCL DDKAEKTFFV CQGCQRMFHA DCMGVREHEV NNQTWHCQIC LCRKQLLVLQ 960 SYCKSQYKDD VSMDNKGSGR QTEVTFSITK PEIVQQLLLN YLQDAASADD VHLFVRWLYV 1020 CLWYKDDPPK SQQKFLYYLA RLNSKAIVRD SGTVFSLLTR DLIKQITLVL GRNTSFARGF 1080 DKILHLLLAS LRENSPVIRA KALRAVSIVV EADPEVLGDK RVQPAVEGRF CDSAISVREA 1140 ALELVGRHIA SHPDVGLKYF EKVAERIKDT GVSVRKRSIK IIRDMCVSNK DFSEFTSACI 1200 AIISRIGDDE SSIQDLVCKT FYEFWFEENT GSHTQFFGDD SSVPLEVAKK VEQIVEMLRR 1260 IPTPHHLVTV IKRNLALDFF PQAAKAAGIN PVLLASVRNR CELMCKFLLE RILQVEELNI 1320 QEVEMRALPY VQVLHAFCVV DPMLLAPVSN PSQFVVTLQP YLKSQDDNRV VAKLLESIIF 1380 IIDAVLPLVR KLPQNVLEEL EQDLKSMIVR HSFLTVVHAC IKCLCAVSKV AGKGATVVEY 1440 LIQVFYKRLD AEEVDNQQAL GFVLIARPEF MLEKDIGKIL EDTFSSGSDV RLKMQTLQNM 1500 YDYLLDAESQ LGTDTTSNSV ADCSVEGGNA VPVAAGAGDT NICGGIVQLY WDNILERCLD 1560 FNEQIRNSAL KIVEVVLRQG LVHPITCVPF LIALETDPLE ANSTLAHHLL MNMNENRLGD 1620 GLQMSFGFIQ SIRPGTEREN TIPPLKASGN AKGKVDDVSF AQARLGVSRI YKLIRGNRVS 1680 RNKFMSSIVR KFDNPSWTTS VVPFLMYCTE ILALLPFTTP DEPLYLVYAI NRVIQVKAGQ 1740 LEAKLKALTL HLLQRGAPRG NGVIKEDHAA PPFIRGMALV DLNGTIEPET AFRPAPNYMA 1800 AMDLNGAIEQ DPADEYVSNQ DTMLEAKIGK SSESSSGISI DDVQIIQADC LAAIALQLLL 1860 KLKRHLKIVY SLNDARCQAF SPTDPIKPGD AFTKQSIPFD VSDTHTNLPG TYQELVQRYQ 1920 DFKNALKEDT VDFSTYTANV KRKRPAPRKG RKSGVRDDDV DNDDDDDWSG GARRLSYSGR 1980 RGGQTRSRQR * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5t8v_A | 6e-32 | 496 | 1226 | 78 | 757 | Putative uncharacterized protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein required for cell fate determination during embryogenesis (PubMed:19228337, PubMed:15266054, PubMed:28137757). Involved in sister chromatid cohesion during meiosis and mitosis (PubMed:19228337, PubMed:19533160). Forms a complex with SCC4, which is required for the association of the cohesin complex with chromosomes (PubMed:28137757). Plays a structural role in chromatin, especially in centromere organization, chromosomal axis formation, and distribution of the cohesin subunit SCC3 on chromosomes (PubMed:19228337). {ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:19228337, ECO:0000269|PubMed:19533160, ECO:0000269|PubMed:28137757}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna04303.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011467895.1 | 0.0 | PREDICTED: nipped-B-like protein A | ||||
Swissprot | A5HEI1 | 0.0 | SCC2_ARATH; Sister chromatid cohesion protein SCC2 | ||||
TrEMBL | A0A2P6S406 | 0.0 | A0A2P6S406_ROSCH; Sister chromatid cohesion protein | ||||
STRING | XP_004306090.1 | 0.0 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 6e-21 | NAC-like, activated by AP3/PI |
Link Out ? help Back to Top | |
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Phytozome | mrna04303.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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