PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna04269.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

M-type_MADS

Protein Properties

Length: 427aa MW: 46483.2 Da PI: 4.148

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna04269.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	44.9	1.5e-14	39	74	16	51
HHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 16 RrngilKKAeELSvLCdaevaviifsstgklyeyss 51 R +++KK eEL +LCda+vav+i++s+g ++++++ mrna04269.1-v1.0-hybrid 39 RTLTLFKKGEELATLCDAQVAVLIYGSNGSVQTWPN 74 6779******************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	5.2E-4	26	75	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	10.862	39	76	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	8.11E-13	39	101	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.2E-10	39	72	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MVMCKSPPRS ATQLEQVTKP KLAGKVMKQK INSKAIDGRT LTLFKKGEEL ATLCDAQVAV 60 LIYGSNGSVQ TWPNDSKTVK DILLKYKQSA DKKISNRSFK SMKNKVADTA GEELHQNPCF 120 EGLGEEFEKL TQDSLMGLSG FFESKEQNSD ETINLIEGSS QPMEGSTIDH PENSSNCNPP 180 IELAENIWYI PMSEDFDKGQ TLLTDSLDSG GIETSTSNSL VYQDTPYGIG NSTISNEELG 240 CLQASGDFEN YSSNFGTDLW TSTSSSLDYQ NTYYPDFPTV IPDSSSSTNL EQLGHDRGML 300 QANGDSSTSF SSGSSDEVWI NNNGSLEDFE RWLNDETMTG SEEHQSCVSA ASISGYSTPT 360 SCQSGRLWTD SLGLEAAANN VSNFVNGHDQ QGMVAPKPSP LEEVLMTALQ PKHLELQNPP 420 ELIIID*

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MVMCKSPPRS ATQLEQVTKP KLAGKVMKQK INSKAIDGRT LTLFKKGEEL ATLCDAQVAV  60
LIYGSNGSVQ TWPNDSKTVK DILLKYKQSA DKKISNRSFK SMKNKVADTA GEELHQNPCF  120
EGLGEEFEKL TQDSLMGLSG FFESKEQNSD ETINLIEGSS QPMEGSTIDH PENSSNCNPP  180
IELAENIWYI PMSEDFDKGQ TLLTDSLDSG GIETSTSNSL VYQDTPYGIG NSTISNEELG  240
CLQASGDFEN YSSNFGTDLW TSTSSSLDYQ NTYYPDFPTV IPDSSSSTNL EQLGHDRGML  300
QANGDSSTSF SSGSSDEVWI NNNGSLEDFE RWLNDETMTG SEEHQSCVSA ASISGYSTPT  360
SCQSGRLWTD SLGLEAAANN VSNFVNGHDQ QGMVAPKPSP LEEVLMTALQ PKHLELQNPP  420
ELIIID*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna04269.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15475	7	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65330.1	2e-13	AGAMOUS-like 78

Link Out ? help Back to Top
Phytozome	mrna04269.1-v1.0-hybrid