PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna04255.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | TCP | ||||||||
Protein Properties | Length: 367aa MW: 40186.1 Da PI: 6.8798 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 97.1 | 3.3e-30 | 65 | 208 | 2 | 112 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...................... 65 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl +ak i++l+ + mrna04255.1-v1.0-hybrid 65 FGGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLDAAKDDIDQLPPLpmmppapgsygggglglmnhqs 150 689*************************************************************8888888877777777776666 PP TCP 66 .................ssssaseceaesssssasnsssg...............kaaksaakskksqksaasalnlak 112 + ++ k+ ++s ++++ +++ + +++ mrna04255.1-v1.0-hybrid 151 llnitpssldqnigdhqG---------------------FrtniwrstndgeedqENDKDGEESDEDDHGKQEGNVVDH 208 665444433333322220.....................0232332222222221222222223333333333333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.1E-27 | 67 | 177 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 30.501 | 67 | 125 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0009507 | Cellular Component | chloroplast |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MIRSPNTNEA DVQAPAGNSS AQNEAGKTSK LALSSSTSRS STSATVAPWM RLSKDPRIVR 60 VSRAFGGKDR HSKVCTVRGL RDRRVRLSVP TAIQLYDLQD RLGLNQPSKV VDWLLDAAKD 120 DIDQLPPLPM MPPAPGSYGG GGLGLMNHQS LLNITPSSLD QNIGDHQGFR TNIWRSTNDG 180 EEDQENDKDG EESDEDDHGK QEGNVVDHGS SSSNNFLMTR TSTTTNHPLF FPGLLNNSNA 240 MPNYSFHNWD QNQSSNFPLS HQLGSHGFTA HNFNVASLPS TLSLSTGTTQ SYFPSHATTD 300 AADHQIDIPR QFDHHMQNSH HQNLLASSVY PSQQSMQRAT PQNLMSMITK LAHSSQPNKD 360 QKPPSR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-18 | 72 | 126 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 2e-18 | 72 | 126 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00326 | DAP | Transfer from AT3G02150 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna04255.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004304223.1 | 0.0 | PREDICTED: transcription factor TCP13 | ||||
TrEMBL | A0A1Q1NA39 | 0.0 | A0A1Q1NA39_FRAVE; PCF transcription factor 15 | ||||
STRING | XP_004304223.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF932 | 34 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 4e-43 | plastid transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | mrna04255.1-v1.0-hybrid |