PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna04249.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 616aa    MW: 69648.2 Da    PI: 4.9965
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna04249.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM83.44.6e-2671293128
                      NAM   3 pGfrF.hPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvka.eekewyfFskrdkkyatgkrknratksgyWk 84 
                              pG+rF +Ptd+e++ +yL +k+ g++ +  ++i++ d+y++ P++Lp + +v++ +++ewyf+++r +k+      +  t++gy  
  mrna04249.1-v1.0-hybrid   7 PGLRFyQPTDDEIIRNYLVPKILGTPKPY-DTITTEDVYSTSPEHLPlEeNVDHfNDNEWYFYTTRTNKN------HYLTRNGYYL 85 
                              8999957*******************999.88**************953433335888******998864......347889**** PP

                      NAM  85 atgkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128
                              +t  d+++++ ++++vg k++L fy g r ++g kt+W +he+++
  mrna04249.1-v1.0-hybrid  86 TTSMDEQIFR-NNKVVGFKRILRFYLGsRPETGIKTEWSVHEFQA 129
                              **********.999***********885777899*********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100529.6076159IPR003441NAC domain
SuperFamilySSF1019415.49E-306158IPR003441NAC domain
PfamPF023656.1E-137128IPR003441NAC domain
HamapMF_0301222.746209607IPR027528Eukaryotic translation initiation factor 3 subunit M
PfamPF013992.1E-11470568IPR000717Proteasome component (PCI) domain
SMARTSM000883.0E-14500590IPR000717Proteasome component (PCI) domain
SMARTSM007533.0E-14500590No hitNo description
SuperFamilySSF467851.66E-5525571IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.9E-4530572IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005829Cellular Componentcytosol
GO:0005852Cellular Componenteukaryotic translation initiation factor 3 complex
GO:0003677Molecular FunctionDNA binding
GO:0003743Molecular Functiontranslation initiation factor activity
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MAAPPFPGLR FYQPTDDEII RNYLVPKILG TPKPYDTITT EDVYSTSPEH LPLEENVDHF  60
NDNEWYFYTT RTNKNHYLTR NGYYLTTSMD EQIFRNNKVV GFKRILRFYL GSRPETGIKT  120
EWSVHEFQAN PGVFPAANLL GNVVQEKLSS LVVCKILRTQ EPSVNESEER GRDEGDSSGV  180
DMEELPSTSS LRLLRPKHQN LNRSCTEPST MTTIVPTSEE IPALAVVRYA SELAWADAGA  240
EVADEEVRRL YEEAKQCMDN ARWFDLVSLM LTSADVILSK VSDKDLECIF TVICNVVTNS  300
ESLEEVRQIA ELISGKVTQQ PSDKPASRLK ILFTLYNLLE DPYSRFSVYL SALNLAINGK  360
VTEHVLPSFK QIDSFLKEWN IGVSDQRQLF LTISNVLKEH KSLAKESFKF LTKYLATFSG  420
EDAQVLSQAK DEAVRTIVEF VKTPDMFQCD LLDLPAVAQL EKDAKHAPAY QLLKVFLTQR  480
LDAYLEFAAA NSALLQSYGL VHEDCITKMR LISLVDLGSD ESGRVPYSLI RDTLQISEDE  540
VEPWVVKAIT AKLLDCKMDQ MNEVVIVTRS TQRVFGKEQW HTLKTKLASW RGNIAHVIST  600
VQANRPVEDG VQAAR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5a5t_M5e-3727059745364EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT M
6fec_85e-3727059745364Eukaryotic translation initiation factor 3 subunit M
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna04249.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304218.10.0PREDICTED: eukaryotic translation initiation factor 3 subunit M
TrEMBLA0A2P6S3U60.0A0A2P6S3U6_ROSCH; Eukaryotic translation initiation factor 3 subunit M
STRINGXP_004304218.10.0(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.14e-21NAC-like, activated by AP3/PI