PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna04232.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB
Protein Properties Length: 459aa    MW: 51863.7 Da    PI: 7.0507
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna04232.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.88e-11116146131
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartm 31 
                              +g+WT+eEd+ll + v+++G g+W+++ar+ 
  mrna04232.1-v1.0-hybrid 116 KGPWTPEEDKLLSEHVNLHGEGRWSSVARCT 146
                              79**************************986 PP
2Myb_DNA-binding506.8e-16198242147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              rg  T++E+ +++++++++G++ W+tIar+++ gRt++++k++w+++
  mrna04232.1-v1.0-hybrid 198 RGHLTPQEEGIIIELHALWGNK-WSTIARYLP-GRTDNEIKNYWRTH 242
                              6778******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.225111156IPR017930Myb domain
SuperFamilySSF466893.52E-8112145IPR009057Homeodomain-like
SMARTSM007171.3E-8115194IPR001005SANT/Myb domain
PfamPF002499.7E-9116145IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-19117199IPR009057Homeodomain-like
CDDcd001672.19E-6118192No hitNo description
SuperFamilySSF466891.34E-19180249IPR009057Homeodomain-like
PROSITE profilePS5129424.783193247IPR017930Myb domain
SMARTSM007177.9E-14197245IPR001005SANT/Myb domain
PfamPF002498.1E-14198242IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-23200246IPR009057Homeodomain-like
CDDcd001679.48E-10202243No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MANNFLVILN ISTVLARELE DTLVEMQLVY SCGAGDRNRV GTLGLRFVDE RVNFFKRLKQ  60
RFGSKMLTMI DIKHREKDTT IQARLPIENL LEKLRYMAMA GVMMGWGGVE ERGWRKGPWT  120
PEEDKLLSEH VNLHGEGRWS SVARCTEGIE NLNPESSLLS LHESATPKSY KLLALGVFMS  180
GKSCRLRWVN YLRPGLKRGH LTPQEEGIII ELHALWGNKW STIARYLPGR TDNEIKNYWR  240
THFKKKDKCT EKQKKRKAQI LKEKQQQLED VETDHENKKI KSANTSTALQ GHGEALACSS  300
ELQNNNVITD ELQQLAQATQ EMNVVFTCPN MDEIQSFPVL ASMNQLGGTS TSVVESTIWS  360
SDNTAIINIG SEDDQGFWGQ LWNLDDDHCH VQANRMEPHT SCSNSESLNR LALHQNQAIS  420
ATSFGAIHTT GATRVNNFSW GEDIHTDKCF YSGSGYIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-2111624627127MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00388DAPTransfer from AT3G30210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna04232.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306055.20.0PREDICTED: transcription factor WER
TrEMBLA0A2P6S3Q01e-174A0A2P6S3Q0_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004306055.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.15e-54myb domain protein 121