PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna04187.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | bZIP | ||||||||
Protein Properties | Length: 220aa MW: 25024.6 Da PI: 5.8802 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 47.6 | 3.5e-15 | 98 | 148 | 5 | 55 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +++rr+++NRe+ArrsR RK++ ++eL v L +eN++L ++l+++++ mrna04187.1-v1.0-hybrid 98 RKQRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLVDKLNHMSES 148 689***************************************777776654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 6.1E-14 | 94 | 158 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.588 | 96 | 159 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 4.1E-13 | 98 | 156 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.34E-13 | 98 | 147 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 2.3E-12 | 98 | 171 | No hit | No description |
CDD | cd14702 | 1.27E-18 | 99 | 150 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 101 | 116 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MQPAEVTGLP YLVPSSSLSS PYSTQFSMMS TTTQSNPASA FPFNRFSATP LYNSYQFPSH 60 LVPQEVNNNN NPQQPSSFSS NSTSDEADEQ QLSLINERKQ RRMISNRESA RRSRMRKQKH 120 LDELWSQVVW LRNENHQLVD KLNHMSESHD RALQENAQLK EEVSELRELL SDLQLHSPNS 180 NYHPSLRDQL EVDVPCNTAY LRAESSNQPI TTSSMDLLG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 110 | 117 | RRSRMRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00389 | DAP | Transfer from AT3G30530 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna04187.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004304176.1 | 1e-158 | PREDICTED: basic leucine zipper 43 | ||||
Swissprot | Q9FMC2 | 6e-40 | BZP43_ARATH; Basic leucine zipper 43 | ||||
TrEMBL | A0A2P6S3I8 | 1e-136 | A0A2P6S3I8_ROSCH; Putative transcription factor bZIP family | ||||
STRING | XP_004304176.1 | 1e-158 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1604 | 33 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G30530.1 | 2e-47 | basic leucine-zipper 42 |
Link Out ? help Back to Top | |
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Phytozome | mrna04187.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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